Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Forward (+)

25766534 .. 25769787

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1149000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAGTGATGACATGGCTGAAGTTCATTGGCCATGGAACGTCAAGGGACCCAACTCCAAGCTCTACCCTTGTAGGAAGCCATCTCTGCTGAGCTCCGGTTCGCAGGTGATCCAACCACCCCAAACCGACCAATACGTATATCTCCCTCTCTCACAACCAATTTTCATCCGAGGCTTGTCGTTCCCAATGGCCTCCACGTACCGTGATCGGACCTCCGAGTTCCGATCACTCTCCCAGACCCTCCAGAAAATCGGAGGAATCGCAGCCGTTCATCAAGCGCAGAATTCCTCATCTCCCTCCAAATCTCCCGGACCCGCCTCTTCTGGATCTGAGTTCAACAAGAAGGCCTCCCGGATCGGGTTGGGGATCCAGGAAACTTCTCAGAAGATCGCACGGCTCGCCCAGTTGGCGAAGAGGTCATCTATGTTCGATGACCCGACTATGGAAATCCAGGAATTAACTGCTTTGGTGAAGAATGACATTACAACACTAAATGTGGCTCTCACAGATTTGCAAACCATTCAAAACATGGAAATAGCTGATGGAAGTTATTCCCAGGATAAGGTTGTGCATTCAACAGCCGTTTGTGATGACTTGAAAAGCAAACTTATGGGGGCAACCAAACAGCTTCAAGATGTGTTAACCATTAGAACAGAGAACATCAAGGCTCACGAGAACAGGAGGCAGATATTTTCCACAAATGCATCAAGAGAAAACCCTTTTCGGAATCCTGCAAAAACTGTGACCGCACCTGCTCCCTGGTCAACTCCCTCCAGGGCACCCAGCAATTTGCAAGCATCACCATTGCCATCGAAGGATGTTCAAGCTGGCAACCAACTAAGACGAAGGTTAGCTGCAGATAATCCTCCATCACAGCAGATGGAAATGTCCATGTTACAGCAGGTAGTTCCACAGCAACAAGATTATACACAAGGCCGGGCTGTTGCCCTTCACAATGTAGAATCTACGATTACCGAACTGAGTGGGATCTTTACACATTTGGCTACCATGGTTGCACATCAAGGGGAACTCGCTATCAGGATTGACGACAACATGGAAGAATCATTGTCAAATGTTGATGGTGCACACAGCGCTTTACTAAGGAATCTCACCCGAATATCATCAAACAGGTGGCTTATGATCAAGATCTTTGCCATTTTGATATTTTTCCTGATGGTCTTCATCTTCTTTGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

400

Amino Acids

44.2

Weight (kDa)

9.13

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	344 - 395	3.8e-13	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	94, 760
Acc36I	ACCTGC	3 cut(s)	94, 760, 892
AccB1I	GGYRCC	1 cut(s)	778
AciI	CCGC	2 cut(s)	315, 747
AclWI	GGATC	6 cut(s)	103, 334, 361, 362, 374, 995
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	1093
AfiI	CCNNNNNNNGG	3 cut(s)	357, 442, 562
AgsI	TTSAA	6 cut(s)	337, 524, 576, 598, 632, 824
AjnI	CCWGG	5 cut(s)	369, 450, 555, 758, 773
AluBI	AGCT	6 cut(s)	61, 93, 539, 628, 827, 854
AluI	AGCT	6 cut(s)	61, 93, 539, 628, 827, 854
Alw21I	GWGCWC	2 cut(s)	95, 1087
Alw44I	GTGCAC	1 cut(s)	1083
AlwI	GGATC	6 cut(s)	103, 334, 361, 362, 374, 995
Aor51HI	AGCGCT	1 cut(s)	1093
AoxI	GGCC	5 cut(s)	29, 189, 345, 934, 1194
ApaLI	GTGCAC	1 cut(s)	1083
ApeKI	GCWGC	2 cut(s)	263, 854
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	550
AspLEI	GCGC	2 cut(s)	280, 1094
AspS9I	GGNCC	3 cut(s)	47, 210, 311
AsuC2I	CCSGG	3 cut(s)	309, 352, 938
AsuHPI	GGTGA	4 cut(s)	118, 481, 792, 1102
AvaII	GGWCC	3 cut(s)	47, 210, 311
BaeGI	GKGCMC	2 cut(s)	781, 1087
BalI	TGGCCA	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	671
BbsI	GAAGAC	1 cut(s)	1171
Bbv12I	GWGCWC	2 cut(s)	95, 1087
BbvI	GCAGC	2 cut(s)	275, 841
BccI	CCATC	7 cut(s)	88, 536, 817, 874, 877, 1073, 1168
BceAI	ACGGC	3 cut(s)	251, 410, 566
BciT130I	CCWGG	5 cut(s)	371, 452, 557, 760, 775
BclI	TGATCA	1 cut(s)	1140
BcnI	CCSGG	3 cut(s)	309, 352, 938
BfmI	CTRYAG	1 cut(s)	855
BfoI	RGCGCY	1 cut(s)	1095
BfuAI	ACCTGC	3 cut(s)	94, 760, 892
BglI	GCCNNNNNGGC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	1146
BisI	GCNGC	2 cut(s)	264, 855
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	265, 856
Bme1390I	CCNGG	8 cut(s)	309, 352, 371, 452, 557, 760, 775, 938
Bme18I	GGWCC	3 cut(s)	47, 210, 311
BmgT120I	GGNCC	3 cut(s)	47, 210, 311
BmiI	GGNNCC	5 cut(s)	48, 49, 313, 368, 780
BmrFI	CCNGG	8 cut(s)	309, 352, 371, 452, 557, 760, 775, 938
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	2 cut(s)	713, 806
BmuI	ACTGGG	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	1171
BpmI	CTGGAG	2 cut(s)	227, 757
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	309, 352, 938
BsaAI	YACGTR	2 cut(s)	136, 198
BsaBI	GATNNNNATC	1 cut(s)	1145
BsaJI	CCNNGG	6 cut(s)	32, 169, 555, 758, 774, 1008
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 442, 562
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	803
Bse8I	GATNNNNATC	1 cut(s)	1145
BseBI	CCWGG	5 cut(s)	371, 452, 557, 760, 775
BseDI	CCNNGG	6 cut(s)	32, 169, 555, 758, 774, 1008
BseGI	GGATG	2 cut(s)	165, 823
BseJI	GATNNNNATC	1 cut(s)	1145
BseLI	CCNNNNNNNGG	3 cut(s)	357, 442, 562
BseMI	GCAATG	1 cut(s)	803
BseMII	CTCAG	4 cut(s)	80, 321, 395, 971
BseNI	ACTGG	1 cut(s)	403
BseSI	GKGCMC	2 cut(s)	781, 1087
BseXI	GCAGC	2 cut(s)	275, 841
BseYI	CCCAGC	1 cut(s)	782
BshFI	GGCC	5 cut(s)	31, 191, 347, 936, 1196
BshNI	GGYRCC	1 cut(s)	778
BsiHKAI	GWGCWC	2 cut(s)	95, 1087
BsiSI	CCGG	4 cut(s)	96, 309, 352, 937
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	357, 442, 562
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	5 cut(s)	31, 191, 347, 936, 1196
Bsp1286I	GDGCHC	3 cut(s)	95, 781, 1087
Bsp1720I	GCTNAGC	1 cut(s)	89
Bsp19I	CCATGG	2 cut(s)	32, 1008
BspACI	CCGC	2 cut(s)	315, 747
BspANI	GGCC	5 cut(s)	31, 191, 347, 936, 1196
BspCNI	CTCAG	4 cut(s)	81, 322, 394, 972
BspLI	GGNNCC	5 cut(s)	48, 49, 313, 368, 780
BspMAI	CTGCAG	1 cut(s)	859
BspMI	ACCTGC	3 cut(s)	94, 760, 892
BspPI	GGATC	6 cut(s)	103, 334, 361, 362, 374, 995
BspT107I	GGYRCC	1 cut(s)	778
BsrDI	GCAATG	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	6 cut(s)	32, 169, 555, 758, 774, 1008
BssSI	CACGAG	1 cut(s)	671
BssT1I	CCWWGG	2 cut(s)	32, 1008
Bst2BI	CACGAG	1 cut(s)	671
Bst2UI	CCWGG	5 cut(s)	371, 452, 557, 760, 775
Bst4CI	ACNGT	2 cut(s)	203, 742
Bst6I	CTCTTC	2 cut(s)	325, 407
BstBAI	YACGTR	2 cut(s)	136, 198
BstC8I	GCNNGC	3 cut(s)	399, 795, 829
BstDEI	CTNAG	6 cut(s)	89, 330, 381, 839, 980, 1100
BstDSI	CCRYGG	2 cut(s)	32, 1008
BstF5I	GGATG	2 cut(s)	165, 823
BstH2I	RGCGCY	1 cut(s)	1095
BstHHI	GCGC	2 cut(s)	280, 1094
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 398, 407, 1091
BstNI	CCWGG	5 cut(s)	371, 452, 557, 760, 775
BstSCI	CCNGG	8 cut(s)	307, 350, 369, 450, 555, 758, 773, 936
BstSFI	CTRYAG	1 cut(s)	855
BstSLI	GKGCMC	2 cut(s)	781, 1087
BstSNI	TACGTA	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	275, 841
BstV2I	GAAGAC	1 cut(s)	1171
BstX2I	RGATCY	4 cut(s)	326, 366, 987, 1146
BstYI	RGATCY	4 cut(s)	326, 366, 987, 1146
BsuRI	GGCC	5 cut(s)	31, 191, 347, 936, 1196
BtgI	CCRYGG	2 cut(s)	32, 1008
BtsCI	GGATG	2 cut(s)	165, 823
BveI	ACCTGC	3 cut(s)	94, 760, 892
Cac8I	GCNNGC	3 cut(s)	399, 795, 829
CfoI	GCGC	2 cut(s)	280, 1094
Cfr13I	GGNCC	3 cut(s)	47, 210, 311
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	13, 33, 529, 892, 1009, 1054
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	6 cut(s)	89, 330, 381, 839, 980, 1100
EaeI	YGGCCR	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	325, 407
EarI	CTCTTC	2 cut(s)	325, 407
Ecl136II	GAGCTC	1 cut(s)	93
Eco105I	TACGTA	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	32, 1008
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	3 cut(s)	47, 210, 311
Eco47III	AGCGCT	1 cut(s)	1093
Eco53kI	GAGCTC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	5 cut(s)	369, 450, 555, 758, 773
EcoT14I	CCWWGG	2 cut(s)	32, 1008
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	2 cut(s)	32, 1008
FaeI	CATG	6 cut(s)	16, 36, 532, 895, 1012, 1057
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	6 cut(s)	12, 32, 528, 891, 1008, 1053
FauI	CCCGC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	1140
Fnu4HI	GCNGC	2 cut(s)	264, 855
FokI	GGATG	2 cut(s)	152, 830
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	264, 855
GlaI	GCGC	2 cut(s)	279, 1093
GluI	GCNGC	2 cut(s)	264, 855
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	2 cut(s)	227, 757
HaeII	RGCGCY	1 cut(s)	1095
HaeIII	GGCC	5 cut(s)	31, 191, 347, 936, 1196
HapII	CCGG	4 cut(s)	96, 309, 352, 937
HhaI	GCGC	2 cut(s)	280, 1094
Hin1II	CATG	6 cut(s)	16, 36, 532, 895, 1012, 1057
Hin6I	GCGC	2 cut(s)	278, 1092
HinP1I	GCGC	2 cut(s)	278, 1092
HincII	GTYRAC	2 cut(s)	642, 765
HindII	GTYRAC	2 cut(s)	642, 765
HinfI	GANTC	5 cut(s)	258, 727, 962, 1061, 1105
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	4 cut(s)	96, 309, 352, 937
HphI	GGTGA	4 cut(s)	118, 481, 792, 1102
Hpy166II	GTNNAC	3 cut(s)	642, 765, 1085
Hpy188I	TCNGA	8 cut(s)	170, 210, 217, 224, 254, 331, 384, 726
Hpy188III	TCNNGA	8 cut(s)	244, 324, 632, 671, 708, 1039, 1144, 1171
Hpy8I	GTNNAC	3 cut(s)	642, 765, 1085
HpyAV	CCTTC	4 cut(s)	337, 808, 840, 959
HpyCH4III	ACNGT	2 cut(s)	203, 742
HpyCH4IV	ACGT	3 cut(s)	39, 135, 197
HpyCH4V	TGCA	8 cut(s)	514, 571, 704, 734, 793, 857, 1016, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 398, 407, 1091
HpyF3I	CTNAG	6 cut(s)	89, 330, 381, 839, 980, 1100
HpySE526I	ACGT	3 cut(s)	39, 135, 197
Hsp92II	CATG	6 cut(s)	16, 36, 532, 895, 1012, 1057
HspAI	GCGC	2 cut(s)	278, 1092
KflI	GGGWCCC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	1140
KspAI	GTTAAC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	98, 760
Lsp1109I	GCAGC	2 cut(s)	275, 841
LweI	GCATC	2 cut(s)	713, 806
MaeII	ACGT	3 cut(s)	39, 135, 197
MaeIII	GTNAC	2 cut(s)	742, 894
MboII	GAAGA	7 cut(s)	312, 397, 424, 484, 1070, 1171, 1177
MflI	RGATCY	4 cut(s)	326, 366, 987, 1146
MhlI	GDGCHC	3 cut(s)	95, 781, 1087
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	4 cut(s)	159, 283, 455, 787
MluNI	TGGCCA	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	136
Mox20I	TGGCCA	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	706
MroXI	GAANNNNTTC	1 cut(s)	550
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	2 cut(s)	458, 641
Msp20I	TGGCCA	1 cut(s)	31
MspI	CCGG	4 cut(s)	96, 309, 352, 937
MspR9I	CCNGG	8 cut(s)	309, 352, 371, 452, 557, 760, 775, 938
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	5 cut(s)	371, 452, 557, 760, 775
MwoI	GCNNNNNNNGC	4 cut(s)	85, 398, 407, 1091
NciI	CCSGG	3 cut(s)	309, 352, 938
NcoI	CCATGG	2 cut(s)	32, 1008
NlaIII	CATG	6 cut(s)	16, 36, 532, 895, 1012, 1057
NlaIV	GGNNCC	5 cut(s)	48, 49, 313, 368, 780
NmuCI	GTSAC	1 cut(s)	742
NsiI	ATGCAT	1 cut(s)	706
PaqCI	CACCTGC	2 cut(s)	94, 760
PceI	AGGCCT	1 cut(s)	347
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	5 cut(s)	258, 727, 962, 1061, 1105
PfoI	TCCNGGA	4 cut(s)	307, 350, 369, 450
PkrI	GCNGC	2 cut(s)	265, 856
Ppu21I	YACGTR	2 cut(s)	136, 198
PpuMI	RGGWCCY	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	5 cut(s)	369, 450, 555, 758, 773
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	5 cut(s)	369, 450, 555, 758, 773
PspN4I	GGNNCC	5 cut(s)	48, 49, 313, 368, 780
PspPI	GGNCC	3 cut(s)	47, 210, 311
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	4 cut(s)	326, 366, 987, 1146
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	458, 641
SatI	GCNGC	2 cut(s)	264, 855
Sau96I	GGNCC	3 cut(s)	47, 210, 311
ScrFI	CCNGG	8 cut(s)	309, 352, 371, 452, 557, 760, 775, 938
SduI	GDGCHC	3 cut(s)	95, 781, 1087
SfaNI	GCATC	2 cut(s)	713, 806
SfcI	CTRYAG	1 cut(s)	855
SinI	GGWCC	3 cut(s)	47, 210, 311
SnaBI	TACGTA	1 cut(s)	136
Sse9I	AATT	4 cut(s)	159, 283, 455, 787
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	315, 747
SstI	GAGCTC	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	8 cut(s)	307, 350, 369, 450, 555, 758, 773, 936
StyI	CCWWGG	2 cut(s)	32, 1008
TaaI	ACNGT	2 cut(s)	203, 742
TaiI	ACGT	3 cut(s)	42, 138, 200
TaqI	TCGA	2 cut(s)	429, 812
TasI	AATT	4 cut(s)	159, 283, 455, 787
TfiI	GAWTC	5 cut(s)	258, 727, 962, 1061, 1105
Tru1I	TTAA	2 cut(s)	458, 641
Tru9I	TTAA	2 cut(s)	458, 641
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	2 cut(s)	263, 854
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	4 cut(s)	14, 154, 260, 1171
VneI	GTGCAC	1 cut(s)	1083
VpaK11BI	GGWCC	3 cut(s)	47, 210, 311
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	550
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.