Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Reverse (-)

8484992 .. 8487791

Gene Structure 2800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCTCCACTTACCGTGATCGGACCTCCGAGTTCCGATCACTCTCCGATACACTCCAGAAAATCGGAGGAATCACACCCGTTAATCAATCTCAGAATGCTCATTCACCGTCCAGATCTCCCGCCCCGCCCTCTTCCGGATCCGAATTCAACAAGAAGGCCTCGCGCATCGGGTCGGGGATCCACGAAACCACTCTGAAGATCTCACGGCTCGCTCAGTTGGCGAAGAGGTCGTCCATGTTCAATGATCCGACCGTGGAGATTCAGGAGTTAACTTCTTTAGTGAAGAATGATATTACGTCTCTGGATGTGGCTCTTACGGATTTGCAGACCATTCAAAACATGGAGATAGCTGATGGGAAATATTCTCAGGATAAAGTTGTTCATTCGACAGCAGTTTGTGATGACTTGAAAGGCAGACTTATGGGGGCTACAAAAAAACTTCAAGATGTGTTAACCACTAGAACAGAGAATATTAAGGCCCATGAGAACAGGAAACAGATATTTTCCACCAATACCGCAAGAGAGAACCCTTTCAAGAGTCCTGCAAAAACTGTGACTGAACCTCCTCCCTGGTCAACTTCATCAAGTGCATCTGGCAGTGTACAGCCATCACAATCGTCAACAGAGGTTCAAGTTGGAAACCAACTGAGACGAAGGTTAGCTGTAGATAATCCTCCATCGCAGCAGATGGAAATGTCCATGTTACAGCAGGTAGTTCCACGGCAAGAAAATTATACAGAAAGCCGGGCAACAGCTCTTCAAAATGTAGAATCTACAATTTCCGAACTCAGTGGGGTCTTTACACATTTGGCTACTATGGTTGCACATCAAGGGGAACTGGCTATCAGGATTGATGACAACATGGACGAGTCATTAACAAATGTCGAGGGTGCACACAGTGCTTTACTAAGGAATCTCAACCGAATATCATCAAATAGGTGGCTGATCATCAAGATATTTGCCATTTTGATATTTTTCCTGATTGTCTTCATCTTCTTTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

337

Amino Acids

37.15

Weight (kDa)

8.61

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	281 - 332	1.7e-12	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccII	CGCG	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	3 cut(s)	123, 128, 519
AclWI	GGATC	5 cut(s)	135, 148, 175, 188, 242
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	8 cut(s)	151, 244, 338, 412, 446, 538, 635, 764
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	353, 665, 758
AluI	AGCT	3 cut(s)	353, 665, 758
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	2 cut(s)	306, 646
Alw44I	GTGCAC	1 cut(s)	894
AlwI	GGATC	5 cut(s)	135, 148, 175, 188, 242
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	3 cut(s)	3, 159, 480
ApaLI	GTGCAC	1 cut(s)	894
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	24, 481
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	898
BamHI	GGATCC	2 cut(s)	140, 180
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	4 cut(s)	350, 619, 685, 688
BceAI	ACGGC	2 cut(s)	224, 740
BciT130I	CCWGG	1 cut(s)	574
BclI	TGATCA	1 cut(s)	948
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	306, 646
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	703
BglII	AGATCT	2 cut(s)	116, 201
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
Bme1390I	CCNGG	2 cut(s)	574, 749
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 481
BmiI	GGNNCC	2 cut(s)	142, 182
BmrFI	CCNGG	2 cut(s)	574, 749
BmsI	GCATC	2 cut(s)	177, 602
BpiI	GAAGAC	1 cut(s)	982
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	255, 572, 722
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	846
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	3 cut(s)	255, 572, 722
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	5 cut(s)	107, 230, 383, 641, 805
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	5, 161, 482
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	898
BsiSI	CCGG	2 cut(s)	138, 748
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	306, 646
BsmBI	CGTCTC	2 cut(s)	306, 646
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	5, 161, 482
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp13I	TCCGGA	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
BspACI	CCGC	3 cut(s)	123, 128, 519
BspANI	GGCC	3 cut(s)	5, 161, 482
BspCNI	CTCAG	5 cut(s)	106, 229, 382, 642, 804
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	142, 182
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	5 cut(s)	135, 148, 175, 188, 242
BspQI	GCTCTTC	1 cut(s)	765
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	3 cut(s)	255, 572, 722
BssMI	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	5 cut(s)	17, 111, 256, 556, 902
Bst6I	CTCTTC	3 cut(s)	139, 221, 765
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstAUI	TGTACA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	6 cut(s)	93, 216, 369, 650, 791, 911
BstDSI	CCRYGG	2 cut(s)	255, 722
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	22, 41, 119, 143, 183, 204, 250, 951
BstMAI	GTCTC	2 cut(s)	306, 646
BstMBI	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 902
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	572, 747
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	4 cut(s)	116, 140, 180, 201
BstYI	RGATCY	4 cut(s)	116, 140, 180, 201
BsuRI	GGCC	3 cut(s)	5, 161, 482
BtgI	CCRYGG	2 cut(s)	255, 722
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	3 cut(s)	607, 799, 907
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	24, 481
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	5 cut(s)	238, 343, 485, 703, 865
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	6 cut(s)	93, 216, 369, 650, 791, 911
DpnI	GATC	8 cut(s)	21, 40, 118, 142, 182, 203, 249, 950
DpnII	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
DraIII	CACNNNGTG	1 cut(s)	902
Eam1104I	CTCTTC	3 cut(s)	139, 221, 765
EarI	CTCTTC	3 cut(s)	139, 221, 765
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	572
Esp3I	CGTCTC	2 cut(s)	306, 646
FaeI	CATG	5 cut(s)	241, 346, 488, 706, 868
FaiI	YATR	8 cut(s)	239, 344, 425, 486, 704, 738, 821, 866
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	5 cut(s)	237, 342, 484, 702, 864
FauI	CCCGC	2 cut(s)	130, 135
FbaI	TGATCA	1 cut(s)	948
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	5, 161, 482
HapII	CCGG	2 cut(s)	138, 748
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	241, 346, 488, 706, 868
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	4 cut(s)	273, 456, 579, 624
HindII	GTYRAC	4 cut(s)	273, 456, 579, 624
HinfI	GANTC	6 cut(s)	72, 262, 541, 773, 872, 916
HpaI	GTTAAC	2 cut(s)	273, 456
HpaII	CCGG	2 cut(s)	138, 748
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	6 cut(s)	273, 456, 579, 605, 624, 896
Hpy8I	GTNNAC	6 cut(s)	273, 456, 579, 605, 624, 896
HpyAV	CCTTC	2 cut(s)	151, 651
HpyCH4III	ACNGT	5 cut(s)	17, 111, 256, 556, 902
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	328, 548, 593, 827, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 902
HpyF3I	CTNAG	6 cut(s)	93, 216, 369, 650, 791, 911
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	241, 346, 488, 706, 868
HspAI	GCGC	1 cut(s)	166
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	948
KspAI	GTTAAC	2 cut(s)	273, 456
Kzo9I	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
LguI	GCTCTTC	1 cut(s)	765
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	2 cut(s)	177, 602
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	556, 705
MalI	GATC	8 cut(s)	21, 40, 118, 142, 182, 203, 249, 950
MboI	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
MboII	GAAGA	7 cut(s)	126, 211, 238, 298, 752, 982, 988
MflI	RGATCY	4 cut(s)	116, 140, 180, 201
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	3 cut(s)	146, 733, 780
MlyI	GAGTC	2 cut(s)	550, 881
MmeI	TCCRAC	2 cut(s)	275, 619
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
MspI	CCGG	2 cut(s)	138, 748
MspR9I	CCNGG	2 cut(s)	574, 749
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	221, 902
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
NlaIII	CATG	5 cut(s)	241, 346, 488, 706, 868
NlaIV	GGNNCC	2 cut(s)	142, 182
NmuCI	GTSAC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	765
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	72, 262, 773, 916
PkrI	GCNGC	1 cut(s)	687
PleI	GAGTC	2 cut(s)	549, 880
PpsI	GAGTC	2 cut(s)	549, 880
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	142, 182
PspPI	GGNCC	2 cut(s)	24, 481
PsuI	RGATCY	4 cut(s)	116, 140, 180, 201
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
SatI	GCNGC	1 cut(s)	686
Sau3AI	GATC	8 cut(s)	19, 38, 116, 140, 180, 201, 247, 948
Sau96I	GGNCC	2 cut(s)	24, 481
SchI	GAGTC	2 cut(s)	550, 881
ScrFI	CCNGG	2 cut(s)	574, 749
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	2 cut(s)	177, 602
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	146, 733, 780
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	123, 128, 519
SspI	AATATT	2 cut(s)	365, 475
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	572, 747
TaaI	ACNGT	5 cut(s)	17, 111, 256, 556, 902
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	389, 888
TasI	AATT	3 cut(s)	146, 733, 780
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	4 cut(s)	72, 262, 773, 916
Tru1I	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
Tru9I	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
TscAI	CASTG	3 cut(s)	607, 799, 907
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	374, 573, 982
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	3 cut(s)	607, 799, 907
VneI	GTGCAC	1 cut(s)	894
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.