Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Forward (+)

26373807 .. 26376992

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCTTCACGTACCGTGATCGGACCTCGGAGTTCCGATCACTGTCCGAGACCCTCCAGAAAATCGGAGGAATCACAGCCGTTCAGCAACCTCAGAATGTCTCATCTCCGTCCAAACCTCCGGGACCCTCCTCTTCTGGATCCGAATTCAACAAGAAGGCTTCCCGAATCGGGTTGGGGATACAGGAAACCTCTCAGAAGATCTCAAGGCTTACCCAGCTGGCAAAGAGGTCGTCTATGTTTGATGATCCGATAATGGAAATTCAGGAATTAACTGCTTTAGTGAAGAATGACATTACAGCACTGAATGTGGCTCTTACCGATTTGCAAACCATTCAGAGAATGGAAATAGCTGATGGAAGTTATTCCCAGGACAAAGTTGTTCATTCAACAGCCGTCTGTGATGACTTGAAAAGCAAACTTATGACGGCTACCAAACAGCTTCAAGATGTATTAACCACTAGAACAGAGAATATCAAGGCTCACGAGAATAGGAAACAGATATTTTCTACAAATGCATCAAGAGATAACCCTTTCCGGCAACCTGCAAAAAGTGTGAGCGAACCTGCTCCCTGGTCAACTACAACTAGTGCACCTGGAAATTTGCAACCGTCACCATTGCCATCAAATGAAGTTCAAGCTGGCAGCCAACTGAGACGAAGGTTAGCTGTAGATAACCCTCCATCACAGCAAATGGAAATGTCCATGTTACAGCAGGTAGTTCCAAGGCAAGAAAATTATACACAAAGCCGGGCTGTTGCTCTACACAATGTAGAATCTACAATTTCCGAATTGAGTGGCATCTTTACACATTTGGCTACAATGGTTGCACAGCAAGGGGAACTGGCTATCAGGATTGATGACAACATGGAAGAATCACTGGCAAATGTTGAGGGAGCACACAACGCTTTACTAAGGAATCTCAACCGAATATCATCAAATAGGTGGCTTATAATCAAGATATTTGCCATTTTGGTATTTTTCCTGATTGTCTTCATCTTCTTTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

338

Amino Acids

37.39

Weight (kDa)

8.63

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
Acc36I	ACCTGC	3 cut(s)	553, 574, 706
AclWI	GGATC	3 cut(s)	135, 148, 242
AcsI	RAATTY	3 cut(s)	146, 261, 601
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	5 cut(s)	151, 390, 412, 446, 638
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	3 cut(s)	369, 572, 595
AluBI	AGCT	5 cut(s)	220, 353, 442, 641, 668
AluI	AGCT	5 cut(s)	220, 353, 442, 641, 668
Alw21I	GWGCWC	2 cut(s)	595, 901
Alw26I	GTCTC	3 cut(s)	44, 106, 649
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	135, 148, 242
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	3 cut(s)	146, 261, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	24, 125
AsuC2I	CCSGG	2 cut(s)	123, 752
AsuHPI	GGTGA	1 cut(s)	606
AvaII	GGWCC	2 cut(s)	24, 125
BaeGI	GKGCMC	1 cut(s)	595
BamHI	GGATCC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	985
Bbv12I	GWGCWC	2 cut(s)	595, 901
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	3 cut(s)	350, 631, 691
BceAI	ACGGC	3 cut(s)	65, 380, 444
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	3 cut(s)	371, 574, 597
BciVI	GTATCC	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	123, 752
BcoDI	GTCTC	3 cut(s)	44, 106, 649
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	2 cut(s)	462, 588
BfmI	CTRYAG	1 cut(s)	669
BfuAI	ACCTGC	3 cut(s)	553, 574, 706
BfuI	GTATCC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
Bme1390I	CCNGG	5 cut(s)	123, 371, 574, 597, 752
Bme18I	GGWCC	2 cut(s)	24, 125
BmgT120I	GGNCC	2 cut(s)	24, 125
BmiI	GGNNCC	3 cut(s)	126, 127, 142
BmrFI	CCNGG	5 cut(s)	123, 371, 574, 597, 752
BmsI	GCATC	2 cut(s)	527, 810
BpiI	GAAGAC	1 cut(s)	985
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	123, 752
BsaAI	YACGTR	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	27, 369, 572, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	849, 885
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	3 cut(s)	371, 574, 597
BseDI	CCNNGG	4 cut(s)	27, 369, 572, 725
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	3 cut(s)	107, 209, 644
BseNI	ACTGG	2 cut(s)	849, 885
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	657
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	595, 901
BsiSI	CCGG	3 cut(s)	122, 538, 751
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	3 cut(s)	44, 106, 649
BsmBI	CGTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	595, 901
Bsp143I	GATC	5 cut(s)	19, 38, 140, 201, 247
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	106, 208, 645
BspLI	GGNNCC	3 cut(s)	126, 127, 142
BspMI	ACCTGC	3 cut(s)	553, 574, 706
BspPI	GGATC	3 cut(s)	135, 148, 242
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	849, 885
BssECI	CCNNGG	4 cut(s)	27, 369, 572, 725
BssMI	GATC	5 cut(s)	19, 38, 140, 201, 247
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	725
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	3 cut(s)	371, 574, 597
Bst4CI	ACNGT	3 cut(s)	17, 45, 612
Bst6I	CTCTTC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	222, 643
BstDEI	CTNAG	4 cut(s)	93, 195, 653, 914
BstKTI	GATC	5 cut(s)	22, 41, 143, 204, 250
BstMAI	GTCTC	3 cut(s)	44, 106, 649
BstMBI	GATC	5 cut(s)	19, 38, 140, 201, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 905
BstNI	CCWGG	3 cut(s)	371, 574, 597
BstSCI	CCNGG	5 cut(s)	121, 369, 572, 595, 750
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	657
BstV2I	GAAGAC	1 cut(s)	985
BstX2I	RGATCY	2 cut(s)	140, 201
BstYI	RGATCY	2 cut(s)	140, 201
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	3 cut(s)	41, 302, 878
BveI	ACCTGC	3 cut(s)	553, 574, 706
Cac8I	GCNNGC	2 cut(s)	222, 643
Cfr13I	GGNCC	2 cut(s)	24, 125
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	706, 868
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	4 cut(s)	93, 195, 653, 914
DpnI	GATC	5 cut(s)	21, 40, 142, 203, 249
DpnII	GATC	5 cut(s)	19, 38, 140, 201, 247
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	24, 125
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	369, 572, 595
EcoT14I	CCWWGG	1 cut(s)	725
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	725
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	2 cut(s)	709, 871
FaiI	YATR	6 cut(s)	239, 425, 707, 741, 869, 953
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	2 cut(s)	705, 867
Fnu4HI	GCNGC	1 cut(s)	646
Fsp4HI	GCNGC	1 cut(s)	646
FspBI	CTAG	2 cut(s)	462, 588
GluI	GCNGC	1 cut(s)	646
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	122, 538, 751
Hin1II	CATG	2 cut(s)	709, 871
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	5 cut(s)	72, 168, 776, 875, 919
HpaII	CCGG	3 cut(s)	122, 538, 751
HphI	GGTGA	1 cut(s)	606
Hpy166II	GTNNAC	2 cut(s)	579, 593
Hpy8I	GTNNAC	2 cut(s)	579, 593
HpyAV	CCTTC	3 cut(s)	16, 151, 654
HpyCH4III	ACNGT	3 cut(s)	17, 45, 612
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	6 cut(s)	328, 518, 548, 593, 607, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 905
HpyF3I	CTNAG	4 cut(s)	93, 195, 653, 914
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	709, 871
KflI	GGGWCCC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	19, 38, 140, 201, 247
LmnI	GCTCC	2 cut(s)	574, 896
Lsp1109I	GCAGC	1 cut(s)	657
LweI	GCATC	2 cut(s)	527, 810
MaeI	CTAG	2 cut(s)	462, 588
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	612, 708
MalI	GATC	5 cut(s)	21, 40, 142, 203, 249
MboI	GATC	5 cut(s)	19, 38, 140, 201, 247
MboII	GAAGA	6 cut(s)	126, 211, 298, 884, 985, 991
MflI	RGATCY	2 cut(s)	140, 201
MhlI	GDGCHC	2 cut(s)	595, 901
MluCI	AATT	7 cut(s)	146, 261, 269, 601, 736, 783, 791
Mph1103I	ATGCAT	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	3 cut(s)	272, 455, 1012
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	3 cut(s)	122, 538, 751
MspR9I	CCNGG	5 cut(s)	123, 371, 574, 597, 752
MvaI	CCWGG	3 cut(s)	371, 574, 597
MwoI	GCNNNNNNNGC	2 cut(s)	217, 905
NciI	CCSGG	2 cut(s)	123, 752
NdeII	GATC	5 cut(s)	19, 38, 140, 201, 247
NlaIII	CATG	2 cut(s)	709, 871
NlaIV	GGNNCC	3 cut(s)	126, 127, 142
NmuCI	GTSAC	1 cut(s)	612
NsiI	ATGCAT	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	5 cut(s)	72, 168, 776, 875, 919
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	647
Ppu21I	YACGTR	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	953
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	3 cut(s)	369, 572, 595
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	3 cut(s)	369, 572, 595
PspN4I	GGNNCC	3 cut(s)	126, 127, 142
PspPI	GGNCC	2 cut(s)	24, 125
PspPPI	RGGWCCY	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	140, 201
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	272, 455, 1012
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	5 cut(s)	19, 38, 140, 201, 247
Sau96I	GGNCC	2 cut(s)	24, 125
ScrFI	CCNGG	5 cut(s)	123, 371, 574, 597, 752
SduI	GDGCHC	2 cut(s)	595, 901
SfaNI	GCATC	2 cut(s)	527, 810
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	2 cut(s)	24, 125
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	7 cut(s)	146, 261, 269, 601, 736, 783, 791
SspMI	CTAG	2 cut(s)	462, 588
StyD4I	CCNGG	5 cut(s)	121, 369, 572, 595, 750
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	3 cut(s)	17, 45, 612
TaiI	ACGT	1 cut(s)	14
TasI	AATT	7 cut(s)	146, 261, 269, 601, 736, 783, 791
TfiI	GAWTC	5 cut(s)	72, 168, 776, 875, 919
Tru1I	TTAA	3 cut(s)	272, 455, 1012
Tru9I	TTAA	3 cut(s)	272, 455, 1012
TscAI	CASTG	3 cut(s)	48, 309, 885
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	3 cut(s)	374, 645, 985
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	3 cut(s)	48, 309, 885
VneI	GTGCAC	1 cut(s)	591
VpaK11BI	GGWCC	2 cut(s)	24, 125
XapI	RAATTY	3 cut(s)	146, 261, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	2 cut(s)	462, 588
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.