Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Forward (+)

16250976 .. 16253635

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCTCCACGTACCGTGATCGGACCTCCGAGTTCCGATCACTCTCCCAGACCCTTCAGAAAATCGGAGGAATCGCAGCCGTTCATCAAGCTCAGAATTCCCCATCTCCCTCCAAATCTCCCGCACCCGCCTCTTCTGGATCTGAGTTCAACAAGAAGGCCTCCCGGATCGGGTTGGGGATCCAGGAAACCTCTCAGAAGATCGCACGGCTCGCCCAGTTGGCGAAGAGGTCATCAATGTTCGATGACCCGACTATGGAAATCCAGGAATTAACTGCTTTGGTGAAGAATGACATTACAACACTGAATGTGGCTCTCACGGATTTGCAAACCATTCAAAACATGGAAATAGCTGATGGAAGTTATTCCCAGGATAAGGTTGTTCATTCAACAGCCGTTTGTGACGACTTGAAAAGCAAACTTATGGGGGCAACCAAACAGTTTCAAGATGTGTTAACCATTAGAACAGAGAACATCAAGGCTCACGAGAACAGGAAGCAGATATTTTCCACAAATGCATCAAGAGAAAACCCTTTTCGGAATCCTTCAAAAACTGTGACCGCACCTGCTCCCTGGTCAACTCCCTCCAGGGCACCTAGCAATTTTCAAGCATCACCATTGCCATCGAAGGATGTTCAAGCTGGCAACCAACTGAGACGAAGGTTAGCTGCAGATAATCCTCCATCGCAGCAGATGGAAATGTCCATGTTACAGCAGGTAGTTCCACAGCAACAAGATTATACACAAAGCCGGGCTGTTGCTCTTCACAATGTAGAATCTACGATTACCGAACTGAGTGGGATCTTCACACATTTGGCTACCATGGTTGCACATCAAGGGGAACTCGCTATCAGGATTGACGACAACATGGAAGAATCATTGTCAAATGTTGAGGGTGCACACAGCGCTTTACTAAGGAATCTCACCCGAATATCATCAAACAGGTGGCTTATGATCAAGATCTTTGCCATTTTGATATTTTTCCTGATGGTCTTCATCTTCTTTGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

338

Amino Acids

37.29

Weight (kDa)

9.16

Isoelectric Point (pI)

57.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	2 cut(s)	574, 706
AccB1I	GGYRCC	1 cut(s)	592
AciI	CCGC	3 cut(s)	123, 129, 561
AclWI	GGATC	5 cut(s)	148, 175, 176, 188, 809
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	907
AfiI	CCNNNNNNNGG	3 cut(s)	171, 256, 376
AgsI	TTSAA	8 cut(s)	151, 338, 390, 412, 446, 549, 608, 638
AjnI	CCWGG	5 cut(s)	183, 264, 369, 572, 587
AluBI	AGCT	4 cut(s)	92, 353, 641, 668
AluI	AGCT	4 cut(s)	92, 353, 641, 668
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	1 cut(s)	649
Alw44I	GTGCAC	1 cut(s)	897
AlwI	GGATC	5 cut(s)	148, 175, 176, 188, 809
Aor51HI	AGCGCT	1 cut(s)	907
AoxI	GGCC	3 cut(s)	3, 159, 1008
ApaLI	GTGCAC	1 cut(s)	897
ApeKI	GCWGC	3 cut(s)	77, 668, 688
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	2 cut(s)	166, 752
AsuHPI	GGTGA	3 cut(s)	295, 606, 916
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	2 cut(s)	595, 901
BamHI	GGATCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	985
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	3 cut(s)	89, 655, 700
BccI	CCATC	6 cut(s)	112, 350, 631, 688, 691, 982
BceAI	ACGGC	3 cut(s)	65, 224, 380
BciT130I	CCWGG	5 cut(s)	185, 266, 371, 574, 589
BclI	TGATCA	1 cut(s)	954
BcnI	CCSGG	2 cut(s)	166, 752
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	909
BfuAI	ACCTGC	2 cut(s)	574, 706
BglI	GCCNNNNNGGC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	3 cut(s)	78, 669, 689
BlsI	GCNGC	3 cut(s)	79, 670, 690
Bme1390I	CCNGG	7 cut(s)	166, 185, 266, 371, 574, 589, 752
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	182, 594
BmrFI	CCNGG	7 cut(s)	166, 185, 266, 371, 574, 589, 752
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	2 cut(s)	527, 620
BmuI	ACTGGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	985
BpmI	CTGGAG	1 cut(s)	571
BpuMI	CCSGG	2 cut(s)	166, 752
BsaAI	YACGTR	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	959
BsaJI	CCNNGG	4 cut(s)	369, 572, 588, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 256, 376
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	617
Bse8I	GATNNNNATC	1 cut(s)	959
BseBI	CCWGG	5 cut(s)	185, 266, 371, 574, 589
BseDI	CCNNGG	4 cut(s)	369, 572, 588, 822
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	959
BseLI	CCNNNNNNNGG	3 cut(s)	171, 256, 376
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	5 cut(s)	107, 135, 209, 644, 785
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	2 cut(s)	595, 901
BseXI	GCAGC	3 cut(s)	89, 655, 700
BshFI	GGCC	3 cut(s)	5, 161, 1010
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	166, 751
BslI	CCNNNNNNNGG	3 cut(s)	171, 256, 376
BsmAI	GTCTC	1 cut(s)	649
BsmBI	CGTCTC	1 cut(s)	649
BsnI	GGCC	3 cut(s)	5, 161, 1010
Bsp1286I	GDGCHC	2 cut(s)	595, 901
Bsp143I	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	3 cut(s)	123, 129, 561
BspANI	GGCC	3 cut(s)	5, 161, 1010
BspCNI	CTCAG	5 cut(s)	106, 136, 208, 645, 786
BspLI	GGNNCC	2 cut(s)	182, 594
BspMAI	CTGCAG	1 cut(s)	673
BspMI	ACCTGC	2 cut(s)	574, 706
BspPI	GGATC	5 cut(s)	148, 175, 176, 188, 809
BspQI	GCTCTTC	1 cut(s)	768
BspT107I	GGYRCC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	4 cut(s)	369, 572, 588, 822
BssMI	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	5 cut(s)	185, 266, 371, 574, 589
Bst4CI	ACNGT	3 cut(s)	17, 441, 556
Bst6I	CTCTTC	3 cut(s)	139, 221, 768
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	213, 643
BstDEI	CTNAG	6 cut(s)	93, 144, 195, 653, 794, 914
BstDSI	CCRYGG	1 cut(s)	822
BstF5I	GGATG	1 cut(s)	637
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	9 cut(s)	22, 41, 143, 171, 183, 204, 804, 957, 963
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 221, 905
BstNI	CCWGG	5 cut(s)	185, 266, 371, 574, 589
BstSCI	CCNGG	7 cut(s)	164, 183, 264, 369, 572, 587, 750
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	2 cut(s)	595, 901
BstV1I	GCAGC	3 cut(s)	89, 655, 700
BstV2I	GAAGAC	1 cut(s)	985
BstX2I	RGATCY	4 cut(s)	140, 180, 801, 960
BstYI	RGATCY	4 cut(s)	140, 180, 801, 960
BsuRI	GGCC	3 cut(s)	5, 161, 1010
BtgI	CCRYGG	1 cut(s)	822
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	302
BveI	ACCTGC	2 cut(s)	574, 706
Cac8I	GCNNGC	2 cut(s)	213, 643
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	4 cut(s)	343, 706, 823, 868
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	6 cut(s)	93, 144, 195, 653, 794, 914
DpnI	GATC	9 cut(s)	21, 40, 142, 170, 182, 203, 803, 956, 962
DpnII	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
Eam1104I	CTCTTC	3 cut(s)	139, 221, 768
EarI	CTCTTC	3 cut(s)	139, 221, 768
Eco130I	CCWWGG	1 cut(s)	822
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	907
Eco57I	CTGAAG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	5 cut(s)	183, 264, 369, 572, 587
EcoT14I	CCWWGG	1 cut(s)	822
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	4 cut(s)	346, 709, 826, 871
FaiI	YATR	8 cut(s)	257, 344, 425, 707, 741, 824, 869, 953
FatI	CATG	4 cut(s)	342, 705, 822, 867
FauI	CCCGC	2 cut(s)	130, 136
FbaI	TGATCA	1 cut(s)	954
Fnu4HI	GCNGC	3 cut(s)	78, 669, 689
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	78, 669, 689
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	3 cut(s)	78, 669, 689
GsuI	CTGGAG	1 cut(s)	571
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	3 cut(s)	5, 161, 1010
HapII	CCGG	2 cut(s)	166, 751
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	4 cut(s)	346, 709, 826, 871
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	2 cut(s)	456, 579
HindII	GTYRAC	2 cut(s)	456, 579
HinfI	GANTC	5 cut(s)	72, 541, 776, 875, 919
HpaI	GTTAAC	1 cut(s)	456
HpaII	CCGG	2 cut(s)	166, 751
HphI	GGTGA	3 cut(s)	295, 606, 916
Hpy166II	GTNNAC	3 cut(s)	456, 579, 899
Hpy188I	TCNGA	9 cut(s)	24, 31, 38, 60, 68, 96, 145, 198, 540
Hpy188III	TCNNGA	7 cut(s)	138, 446, 485, 522, 853, 958, 985
Hpy8I	GTNNAC	3 cut(s)	456, 579, 899
HpyAV	CCTTC	5 cut(s)	65, 151, 555, 622, 654
HpyCH4III	ACNGT	3 cut(s)	17, 441, 556
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	5 cut(s)	328, 518, 671, 830, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 221, 905
HpyF3I	CTNAG	6 cut(s)	93, 144, 195, 653, 794, 914
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	346, 709, 826, 871
HspAI	GCGC	1 cut(s)	906
Ksp22I	TGATCA	1 cut(s)	954
KspAI	GTTAAC	1 cut(s)	456
Kzo9I	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
LguI	GCTCTTC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	3 cut(s)	89, 655, 700
LweI	GCATC	2 cut(s)	527, 620
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	401, 556, 708
MalI	GATC	9 cut(s)	21, 40, 142, 170, 182, 203, 803, 956, 962
MboI	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
MboII	GAAGA	9 cut(s)	126, 211, 238, 298, 755, 796, 884, 985, 991
MflI	RGATCY	4 cut(s)	140, 180, 801, 960
MhlI	GDGCHC	2 cut(s)	595, 901
MluCI	AATT	3 cut(s)	97, 269, 601
Mph1103I	ATGCAT	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	2 cut(s)	272, 455
MspI	CCGG	2 cut(s)	166, 751
MspR9I	CCNGG	7 cut(s)	166, 185, 266, 371, 574, 589, 752
MvaI	CCWGG	5 cut(s)	185, 266, 371, 574, 589
MwoI	GCNNNNNNNGC	3 cut(s)	212, 221, 905
NciI	CCSGG	2 cut(s)	166, 752
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
NlaIII	CATG	4 cut(s)	346, 709, 826, 871
NlaIV	GGNNCC	2 cut(s)	182, 594
NmuCI	GTSAC	2 cut(s)	401, 556
NsiI	ATGCAT	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	5 cut(s)	72, 541, 776, 875, 919
PfoI	TCCNGGA	3 cut(s)	164, 183, 264
PkrI	GCNGC	3 cut(s)	79, 670, 690
Ppu21I	YACGTR	1 cut(s)	12
Psp6I	CCWGG	5 cut(s)	183, 264, 369, 572, 587
PspGI	CCWGG	5 cut(s)	183, 264, 369, 572, 587
PspN4I	GGNNCC	2 cut(s)	182, 594
PspPI	GGNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	673
PsuI	RGATCY	4 cut(s)	140, 180, 801, 960
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	2 cut(s)	272, 455
SatI	GCNGC	3 cut(s)	78, 669, 689
Sau3AI	GATC	9 cut(s)	19, 38, 140, 168, 180, 201, 801, 954, 960
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	7 cut(s)	166, 185, 266, 371, 574, 589, 752
SduI	GDGCHC	2 cut(s)	595, 901
SfaNI	GCATC	2 cut(s)	527, 620
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	97, 269, 601
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	123, 129, 561
SspMI	CTAG	1 cut(s)	597
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	7 cut(s)	164, 183, 264, 369, 572, 587, 750
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	3 cut(s)	17, 441, 556
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	243, 626
TasI	AATT	3 cut(s)	97, 269, 601
TfiI	GAWTC	5 cut(s)	72, 541, 776, 875, 919
Tru1I	TTAA	2 cut(s)	272, 455
Tru9I	TTAA	2 cut(s)	272, 455
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	401, 556
TseI	GCWGC	3 cut(s)	77, 668, 688
Tsp45I	GTSAC	2 cut(s)	401, 556
TspDTI	ATGAA	3 cut(s)	74, 374, 985
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	309
VneI	GTGCAC	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.