Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Forward (+)

61165594 .. 61168679

Gene Structure 3086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTCAACGATCCGACTGTGGAGATTCAGGAGTTAACTTCATTAGTGAAGAATGATATTACGTCTCTGGATGTGGCTCTTACGGATCTGCAGACCATCCAAAACATGGAGATAGCTGATGGGAAATATTCTCAGGATAAAGTTGTTCATTCGACAGCAGTTTGTGATGACTTGAAAGGCAGACTTATGGGGGCAACAAAAAAGCTTCAAGATGTGTTAACCACTAGAACAGAGAATATTAAGGCCCATGAGAACAGGAAACAGATATTTTCCACCAATACCGCAAGAGAGAACCCTTTCAAGAGTCCTGCAAAAACTGTGACTGAACCTCCTCCCTGGTCAACTTCATCAAGTGCATCTGGCAGTGTACAGCCATCACAATCATCAACAGAGGTTCAAGTTGGAAACCAACTGAGACGAAGGTTAGCTGTAGATAATCCTCCATCGCAGCAGATGGAAATGTCCATGTTACAGCAGGTAGTTCCACGGCAAGAAAATTATACAGAAAGCCGGGCAACAGCTCTTCAAAATGTAGAATCTACAATTTCCGAACTCAGTGGGGTCTTTACACATTTGGCTACTATGGTTGCACATCAAGGGGAACTGGCTATCAGGATTGATGACAACATGGATGAGTCATTAACAAATGTCGAGGGTGCACACAGTGCTTTACTAAGGAATCTCAACCGAATATCATCAAATAGGTGGCTGATCATCAAGATATTTGCCATTTTGATATTTTTCCTGATTGTCTTCATCTTCTTTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

257

Amino Acids

28.65

Weight (kDa)

5.58

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	202 - 253	1.1e-12	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccB7I	CCANNNNNTGG	1 cut(s)	106
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	5, 93
AdeI	CACNNNGTG	1 cut(s)	665
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	6 cut(s)	7, 175, 209, 301, 398, 527
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	116, 205, 428, 521
AluI	AGCT	4 cut(s)	116, 205, 428, 521
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	2 cut(s)	69, 409
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	5, 93
AoxI	GGCC	1 cut(s)	243
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	5 cut(s)	104, 113, 382, 448, 451
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	337
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	69, 409
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	89, 429
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	2 cut(s)	337, 512
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	337, 512
BmsI	GCATC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	335, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	335, 485
BseGI	GGATG	3 cut(s)	76, 96, 637
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	146, 404, 568
BseNI	ACTGG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	69, 409
BsmBI	CGTCTC	2 cut(s)	69, 409
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	10, 85, 711
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	145, 405, 567
BspMAI	CTGCAG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	5, 93
BspQI	GCTCTTC	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	335, 485
BssMI	GATC	3 cut(s)	10, 85, 711
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	3 cut(s)	19, 319, 665
Bst6I	CTCTTC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	367
BstDEI	CTNAG	4 cut(s)	132, 413, 554, 674
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	76, 96, 637
BstKTI	GATC	3 cut(s)	13, 88, 714
BstMAI	GTCTC	2 cut(s)	69, 409
BstMBI	GATC	3 cut(s)	10, 85, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	335, 510
BstSFI	CTRYAG	2 cut(s)	89, 429
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	745
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	485
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	76, 96, 637
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	370, 562, 670
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	4 cut(s)	106, 248, 466, 628
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	4 cut(s)	132, 413, 554, 674
DpnI	GATC	3 cut(s)	12, 87, 713
DpnII	GATC	3 cut(s)	10, 85, 711
DraIII	CACNNNGTG	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	335
Esp3I	CGTCTC	2 cut(s)	69, 409
FaeI	CATG	4 cut(s)	109, 251, 469, 631
FaiI	YATR	7 cut(s)	107, 188, 249, 467, 501, 584, 629
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	4 cut(s)	105, 247, 465, 627
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	3 cut(s)	83, 83, 644
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	4 cut(s)	109, 251, 469, 631
HincII	GTYRAC	3 cut(s)	36, 219, 342
HindII	GTYRAC	3 cut(s)	36, 219, 342
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	5 cut(s)	25, 304, 536, 635, 679
HpaI	GTTAAC	2 cut(s)	36, 219
HpaII	CCGG	1 cut(s)	511
Hpy166II	GTNNAC	5 cut(s)	36, 219, 342, 368, 659
Hpy188I	TCNGA	2 cut(s)	15, 550
Hpy188III	TCNNGA	8 cut(s)	29, 68, 134, 209, 301, 613, 718, 745
Hpy8I	GTNNAC	5 cut(s)	36, 219, 342, 368, 659
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	3 cut(s)	19, 319, 665
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	91, 311, 356, 590, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	4 cut(s)	132, 413, 554, 674
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	109, 251, 469, 631
Ksp22I	TGATCA	1 cut(s)	711
KspAI	GTTAAC	2 cut(s)	36, 219
Kzo9I	GATC	3 cut(s)	10, 85, 711
LguI	GCTCTTC	1 cut(s)	528
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	319, 468
MalI	GATC	3 cut(s)	12, 87, 713
MboI	GATC	3 cut(s)	10, 85, 711
MboII	GAAGA	4 cut(s)	61, 515, 745, 751
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	2 cut(s)	496, 543
MlyI	GAGTC	2 cut(s)	313, 644
MmeI	TCCRAC	2 cut(s)	38, 382
MnlI	CCTC	5 cut(s)	339, 342, 385, 450, 646
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	5 cut(s)	35, 218, 240, 641, 772
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	2 cut(s)	337, 512
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	665
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	10, 85, 711
NlaIII	CATG	4 cut(s)	109, 251, 469, 631
NmuCI	GTSAC	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	25, 536, 679
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	2 cut(s)	312, 643
PpsI	GAGTC	2 cut(s)	312, 643
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	5 cut(s)	35, 218, 240, 641, 772
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	3 cut(s)	10, 85, 711
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	313, 644
ScrFI	CCNGG	2 cut(s)	337, 512
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	2 cut(s)	89, 429
Sse9I	AATT	2 cut(s)	496, 543
SsiI	CCGC	1 cut(s)	282
SspI	AATATT	2 cut(s)	128, 238
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	335, 510
TaaI	ACNGT	3 cut(s)	19, 319, 665
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	152, 651
TasI	AATT	2 cut(s)	496, 543
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	3 cut(s)	25, 536, 679
Tru1I	TTAA	5 cut(s)	35, 218, 240, 641, 772
Tru9I	TTAA	5 cut(s)	35, 218, 240, 641, 772
TscAI	CASTG	3 cut(s)	370, 562, 670
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	30, 137, 336, 745
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	3 cut(s)	370, 562, 670
Van91I	CCANNNNNTGG	1 cut(s)	106
VneI	GTGCAC	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.