Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001154.1

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Forward (+)

189927 .. 192621

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001154.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggcctccacttaccgtgatcggacctccgagttccgatcactctccgacactctccagaaaatcggaggaatcacacccgttaatcaatcacagaatgctcattcaccgtccagatctcccgccccggcctcttccggatccgaattcaacaagaaggcctcgcggatcgggtcggggatccacgaaaccactctgaagatctcacggctcccgcagttggcaaagaggtcgtccatgttcaacgatccgactgtggagattcaggagttaacttcattagtgaagaatgatattacgtctctggatgtggctcttacggatctgcagaccatccaaaacatggagatagctgatgggaaatattctcaggataaagttgttcactcgacagcagtttgtgatgacttgaaaggcagacttatgggggctacaaaaaagcttcaagatgtgttaaccactagaacagagaacattaaggcccatgagaacaggaaacagatattttccaccaataccgcaagagagaaccctttcaagagtcctgcaaaaactgtgactgaacctcctccctggtcaacttcatcaagtgcatctggcagtgtacagccatcacaatcatcaacagaggttcaagttggaaaccaactgagacgaaggttagctgtagataatcctccatctcagcagatggaaatgtccatgttacagcaggtagttccacggcaagaaatttatacagaaagccgggcaacagctcttcaaaatgtagaatctacaatttccgaactcagtggggtctttacacatttggctactatggttgcacatcaaggggaactggctatcaggattgatgacaacatggacgagtcattaacaaatgtcgagggtgcacacagtgctttactaaggaatctcaaccgaatatcatcaaataggtggctgatcatcaagatatttgccattttgatatttttcctgattgtcttcatcttctttgtggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

336

Amino Acids

37.15

Weight (kDa)

8.61

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccII	CGCG	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	4 cut(s)	123, 166, 215, 519
AclWI	GGATC	7 cut(s)	135, 148, 175, 176, 188, 242, 330
AcsI	RAATTY	2 cut(s)	146, 732
AcuI	CTGAAG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	220, 343
AgsI	TTSAA	7 cut(s)	151, 244, 412, 446, 538, 635, 764
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	4 cut(s)	353, 442, 665, 758
AluI	AGCT	4 cut(s)	353, 442, 665, 758
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	2 cut(s)	306, 646
Alw44I	GTGCAC	1 cut(s)	894
AlwI	GGATC	7 cut(s)	135, 148, 175, 176, 188, 242, 330
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	4 cut(s)	3, 129, 159, 480
ApaLI	GTGCAC	1 cut(s)	894
ApoI	RAATTY	2 cut(s)	146, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	24, 481
AsuC2I	CCSGG	2 cut(s)	128, 749
AsuHPI	GGTGA	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	898
BamHI	GGATCC	2 cut(s)	140, 180
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	1 cut(s)	898
BccI	CCATC	5 cut(s)	341, 350, 619, 685, 688
BceAI	ACGGC	2 cut(s)	224, 740
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	1 cut(s)	574
BclI	TGATCA	1 cut(s)	948
BcnI	CCSGG	2 cut(s)	128, 749
BcoDI	GTCTC	2 cut(s)	306, 646
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	326, 666
BfuAI	ACCTGC	1 cut(s)	703
BglII	AGATCT	2 cut(s)	116, 201
Bme1390I	CCNGG	3 cut(s)	128, 574, 749
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 481
BmiI	GGNNCC	3 cut(s)	142, 182, 212
BmrFI	CCNGG	3 cut(s)	128, 574, 749
BmsI	GCATC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	982
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	128, 749
BsaJI	CCNNGG	3 cut(s)	126, 572, 722
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 343
Bse1I	ACTGG	1 cut(s)	846
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	3 cut(s)	126, 572, 722
BseGI	GGATG	2 cut(s)	313, 333
BseLI	CCNNNNNNNGG	2 cut(s)	220, 343
BseMII	CTCAG	4 cut(s)	383, 641, 698, 805
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	898
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	4 cut(s)	5, 131, 161, 482
BsiHKAI	GWGCWC	1 cut(s)	898
BsiSI	CCGG	3 cut(s)	128, 138, 748
BslI	CCNNNNNNNGG	2 cut(s)	220, 343
BsmAI	GTCTC	2 cut(s)	306, 646
BsmBI	CGTCTC	2 cut(s)	306, 646
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	4 cut(s)	5, 131, 161, 482
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp13I	TCCGGA	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	604
BspACI	CCGC	4 cut(s)	123, 166, 215, 519
BspANI	GGCC	4 cut(s)	5, 131, 161, 482
BspCNI	CTCAG	4 cut(s)	382, 642, 697, 804
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	142, 182, 212
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	7 cut(s)	135, 148, 175, 176, 188, 242, 330
BspQI	GCTCTTC	1 cut(s)	765
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	3 cut(s)	126, 572, 722
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	5 cut(s)	17, 111, 256, 556, 902
Bst6I	CTCTTC	2 cut(s)	139, 765
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstAUI	TGTACA	1 cut(s)	604
BstDEI	CTNAG	5 cut(s)	369, 650, 684, 791, 911
BstDSI	CCRYGG	1 cut(s)	722
BstF5I	GGATG	2 cut(s)	313, 333
BstFNI	CGCG	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	306, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	902
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	3 cut(s)	126, 572, 747
BstSFI	CTRYAG	2 cut(s)	326, 666
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	5 cut(s)	116, 140, 180, 201, 322
BstYI	RGATCY	5 cut(s)	116, 140, 180, 201, 322
BsuRI	GGCC	4 cut(s)	5, 131, 161, 482
BtgI	CCRYGG	1 cut(s)	722
BtsCI	GGATG	2 cut(s)	313, 333
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	3 cut(s)	607, 799, 907
BveI	ACCTGC	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	24, 481
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	5 cut(s)	238, 343, 485, 703, 865
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	5 cut(s)	369, 650, 684, 791, 911
DraIII	CACNNNGTG	1 cut(s)	902
Eam1104I	CTCTTC	2 cut(s)	139, 765
EarI	CTCTTC	2 cut(s)	139, 765
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	572
Esp3I	CGTCTC	2 cut(s)	306, 646
FaeI	CATG	5 cut(s)	241, 346, 488, 706, 868
FaiI	YATR	8 cut(s)	239, 344, 425, 486, 704, 738, 821, 866
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	5 cut(s)	237, 342, 484, 702, 864
FauI	CCCGC	2 cut(s)	130, 222
FbaI	TGATCA	1 cut(s)	948
FokI	GGATG	2 cut(s)	320, 320
FspBI	CTAG	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	5, 131, 161, 482
HapII	CCGG	3 cut(s)	128, 138, 748
Hin1II	CATG	5 cut(s)	241, 346, 488, 706, 868
HincII	GTYRAC	3 cut(s)	273, 456, 579
HindII	GTYRAC	3 cut(s)	273, 456, 579
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	6 cut(s)	72, 262, 541, 773, 872, 916
HpaI	GTTAAC	2 cut(s)	273, 456
HpaII	CCGG	3 cut(s)	128, 138, 748
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	6 cut(s)	273, 385, 456, 579, 605, 896
Hpy188I	TCNGA	9 cut(s)	24, 31, 38, 49, 68, 145, 198, 252, 787
Hpy8I	GTNNAC	6 cut(s)	273, 385, 456, 579, 605, 896
HpyAV	CCTTC	2 cut(s)	151, 651
HpyCH4III	ACNGT	5 cut(s)	17, 111, 256, 556, 902
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	328, 548, 593, 827, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	902
HpyF3I	CTNAG	5 cut(s)	369, 650, 684, 791, 911
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	241, 346, 488, 706, 868
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	948
KspAI	GTTAAC	2 cut(s)	273, 456
LguI	GCTCTTC	1 cut(s)	765
LmnI	GCTCC	1 cut(s)	216
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	556, 705
MboII	GAAGA	6 cut(s)	126, 211, 298, 752, 982, 988
MflI	RGATCY	5 cut(s)	116, 140, 180, 201, 322
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	3 cut(s)	146, 732, 780
MlyI	GAGTC	2 cut(s)	550, 881
MmeI	TCCRAC	3 cut(s)	72, 275, 619
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
MspI	CCGG	3 cut(s)	128, 138, 748
MspR9I	CCNGG	3 cut(s)	128, 574, 749
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	902
NciI	CCSGG	2 cut(s)	128, 749
NlaIII	CATG	5 cut(s)	241, 346, 488, 706, 868
NlaIV	GGNNCC	3 cut(s)	142, 182, 212
NmuCI	GTSAC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	161
PciSI	GCTCTTC	1 cut(s)	765
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	72, 262, 773, 916
PflMI	CCANNNNNTGG	1 cut(s)	343
PleI	GAGTC	2 cut(s)	549, 880
PpsI	GAGTC	2 cut(s)	549, 880
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	142, 182, 212
PspPI	GGNCC	2 cut(s)	24, 481
PstI	CTGCAG	1 cut(s)	330
PsuI	RGATCY	5 cut(s)	116, 140, 180, 201, 322
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
Sau96I	GGNCC	2 cut(s)	24, 481
SchI	GAGTC	2 cut(s)	550, 881
ScrFI	CCNGG	3 cut(s)	128, 574, 749
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	2 cut(s)	326, 666
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	146, 732, 780
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	4 cut(s)	123, 166, 215, 519
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	126, 572, 747
TaaI	ACNGT	5 cut(s)	17, 111, 256, 556, 902
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	389, 888
TasI	AATT	3 cut(s)	146, 732, 780
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	4 cut(s)	72, 262, 773, 916
Tru1I	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
Tru9I	TTAA	6 cut(s)	84, 272, 455, 477, 878, 1009
TscAI	CASTG	3 cut(s)	607, 799, 907
TseFI	GTSAC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	267, 573, 982
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	3 cut(s)	607, 799, 907
Van91I	CCANNNNNTGG	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	894
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	2 cut(s)	146, 732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.