Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Forward (+)

18695335 .. 18698336

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24180.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCTCCGCTTACCGTGATCGGACCTCCGAGTTCCGATCACTCTCCGACACCCTCCAGAAAATCGGAGGAATCACGCCCGTTCATCAATCTCAGAATGCTCGTTCTTCACCGTCCAGATCCCCCGTCCCACTCTCTTCCGGATCCGAATTCAACAAGAAGGCCTCGCGGATCGGGTCGGGGATCCAGGAAACCACTCAGAAGATCTCACGCCTCGCTCAGTTGGCGAAGAGATCGTCCATGTTCAATGATCCAACTATGGAGATTCAGGAGTTGACTGCGTTAGTGAAGAATGATATTACGACTCTGGATGTGGCTCTTACGGATTTGCATACCATTCAAAACATGGAGATAGCTGATGGGAATTATTCTCAGGATAATGTTGTTCACTCGACAGCAGTTTGTAATGATTTGAAAAGCAGACTTATGGGGGCTACGAAAAAGCTTCAAGATGTGTTAACCACTAGAACAGAGAATATTAAGGCCCATGAGAACAGGAAACAGATATTTTCCACCAATACTGCAAGAGAGAACCCTTTCAAGAGTCCTGCAAAAACTGTGACCGAACCTCCTCCCTGGTCAACTTCATCAAGTGCATCTGGAAGTGTACAACCATCACAATCATCAACAGATGTTCAAGTTGGAAACCAACTCAGACGAAGGTTAGCTGGAGATAATCCTCCATCACAGCAGATGGAAATGTCCATGTTACAGCAGGTAGTTCCACGGCAAGAAAATTATACTGAAAGCCGGGCAACAGCTCTTCAAAATGTAGAATCTACAATTTCCGAACTCAGTGGGGTATTTACACATTTGGCTACTATGGTTGCACATCAAGGGGAACTGGCTATCAGGATCGATGACAACATGGATGAGTCATTGACCAATGTCGAGGGTGCACACAGTGCTTTACTAAGGAATCTCAACCGAATATCATCAAATAGGTGGCTGATCATCAAGGTTTTTGCCATTTTGATATTTTTCCTGATTGTCTTCATCTTCTTCGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

338

Amino Acids

37.27

Weight (kDa)

8.65

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	249 - 300	6.5e-12	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	706
AccII	CGCG	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	2 cut(s)	9, 169
AclWI	GGATC	8 cut(s)	114, 138, 151, 178, 179, 191, 245, 863
AcsI	RAATTY	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	905
AfaI	GTAC	1 cut(s)	609
AgsI	TTSAA	8 cut(s)	154, 247, 341, 415, 449, 541, 638, 767
AjnI	CCWGG	2 cut(s)	186, 575
AluBI	AGCT	4 cut(s)	356, 445, 668, 761
AluI	AGCT	4 cut(s)	356, 445, 668, 761
Alw21I	GWGCWC	1 cut(s)	901
Alw44I	GTGCAC	1 cut(s)	897
AlwI	GGATC	8 cut(s)	114, 138, 151, 178, 179, 191, 245, 863
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	4 cut(s)	3, 162, 483, 1008
ApaLI	GTGCAC	1 cut(s)	897
ApoI	RAATTY	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	24, 484
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	901
BamHI	GGATCC	2 cut(s)	143, 183
BbsI	GAAGAC	1 cut(s)	985
Bbv12I	GWGCWC	1 cut(s)	901
BccI	CCATC	4 cut(s)	353, 622, 688, 691
BceAI	ACGGC	1 cut(s)	743
BciT130I	CCWGG	2 cut(s)	188, 577
BclI	TGATCA	1 cut(s)	951
BcnI	CCSGG	1 cut(s)	752
BfaI	CTAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	706
BglII	AGATCT	1 cut(s)	204
Bme1390I	CCNGG	3 cut(s)	188, 577, 752
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 484
BmiI	GGNNCC	2 cut(s)	145, 185
BmrFI	CCNGG	3 cut(s)	188, 577, 752
BmsI	GCATC	1 cut(s)	605
BoxI	GACNNNNGTC	1 cut(s)	887
BpiI	GAAGAC	1 cut(s)	985
BpmI	CTGGAG	2 cut(s)	41, 690
BpuMI	CCSGG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	858
BsaJI	CCNNGG	2 cut(s)	575, 725
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bse1I	ACTGG	1 cut(s)	849
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	188, 577
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	2 cut(s)	575, 725
BseGI	GGATG	2 cut(s)	316, 877
BseMII	CTCAG	6 cut(s)	107, 212, 233, 386, 667, 808
BseNI	ACTGG	1 cut(s)	849
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	901
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	4 cut(s)	5, 164, 485, 1010
BshVI	ATCGAT	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	141, 751
BslFI	GGGAC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	4 cut(s)	5, 164, 485, 1010
Bsp1286I	GDGCHC	1 cut(s)	901
Bsp13I	TCCGGA	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	607
BspACI	CCGC	2 cut(s)	9, 169
BspANI	GGCC	4 cut(s)	5, 164, 485, 1010
BspCNI	CTCAG	6 cut(s)	106, 211, 232, 385, 666, 807
BspDI	ATCGAT	1 cut(s)	858
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	145, 185
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	8 cut(s)	114, 138, 151, 178, 179, 191, 245, 863
BspQI	GCTCTTC	1 cut(s)	768
BsrGI	TGTACA	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	849
BssECI	CCNNGG	2 cut(s)	575, 725
Bst2UI	CCWGG	2 cut(s)	188, 577
Bst4CI	ACNGT	4 cut(s)	17, 114, 559, 905
Bst6I	CTCTTC	3 cut(s)	142, 224, 768
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstAUI	TGTACA	1 cut(s)	607
BstDEI	CTNAG	7 cut(s)	93, 198, 219, 372, 653, 794, 914
BstDSI	CCRYGG	1 cut(s)	725
BstF5I	GGATG	2 cut(s)	316, 877
BstFNI	CGCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 905
BstNI	CCWGG	2 cut(s)	188, 577
BstPAI	GACNNNNGTC	1 cut(s)	887
BstSCI	CCNGG	3 cut(s)	186, 575, 750
BstSLI	GKGCMC	1 cut(s)	901
BstUI	CGCG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	985
BstX2I	RGATCY	4 cut(s)	119, 143, 183, 204
BstYI	RGATCY	4 cut(s)	119, 143, 183, 204
Bsu15I	ATCGAT	1 cut(s)	858
BsuRI	GGCC	4 cut(s)	5, 164, 485, 1010
BsuTUI	ATCGAT	1 cut(s)	858
BtgI	CCRYGG	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	316, 877
BtsIMutI	CAGTG	2 cut(s)	802, 910
BveI	ACCTGC	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	24, 484
ClaI	ATCGAT	1 cut(s)	858
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	5 cut(s)	241, 346, 488, 706, 868
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	7 cut(s)	93, 198, 219, 372, 653, 794, 914
DraIII	CACNNNGTG	1 cut(s)	905
Eam1104I	CTCTTC	3 cut(s)	142, 224, 768
EarI	CTCTTC	3 cut(s)	142, 224, 768
Eco147I	AGGCCT	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	186, 575
FaeI	CATG	5 cut(s)	244, 349, 491, 709, 871
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	5 cut(s)	240, 345, 487, 705, 867
FbaI	TGATCA	1 cut(s)	951
FokI	GGATG	2 cut(s)	323, 884
FspBI	CTAG	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	41, 690
HaeIII	GGCC	4 cut(s)	5, 164, 485, 1010
HapII	CCGG	2 cut(s)	141, 751
Hin1II	CATG	5 cut(s)	244, 349, 491, 709, 871
HincII	GTYRAC	3 cut(s)	276, 459, 582
HindII	GTYRAC	3 cut(s)	276, 459, 582
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	7 cut(s)	72, 265, 304, 544, 776, 875, 919
HpaI	GTTAAC	1 cut(s)	459
HpaII	CCGG	2 cut(s)	141, 751
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	6 cut(s)	276, 388, 459, 582, 608, 899
Hpy8I	GTNNAC	6 cut(s)	276, 388, 459, 582, 608, 899
HpyAV	CCTTC	2 cut(s)	154, 654
HpyCH4III	ACNGT	4 cut(s)	17, 114, 559, 905
HpyCH4V	TGCA	6 cut(s)	331, 524, 551, 596, 830, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 905
HpyF3I	CTNAG	7 cut(s)	93, 198, 219, 372, 653, 794, 914
Hsp92II	CATG	5 cut(s)	244, 349, 491, 709, 871
Kpn2I	TCCGGA	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	951
KspAI	GTTAAC	1 cut(s)	459
LguI	GCTCTTC	1 cut(s)	768
LweI	GCATC	1 cut(s)	605
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	559, 708
MboII	GAAGA	9 cut(s)	99, 129, 214, 241, 301, 755, 985, 991, 994
MflI	RGATCY	4 cut(s)	119, 143, 183, 204
MhlI	GDGCHC	1 cut(s)	901
MluCI	AATT	4 cut(s)	149, 364, 736, 783
MlyI	GAGTC	3 cut(s)	298, 553, 884
MmeI	TCCRAC	3 cut(s)	72, 278, 622
MroI	TCCGGA	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	2 cut(s)	458, 480
MspI	CCGG	2 cut(s)	141, 751
MspR9I	CCNGG	3 cut(s)	188, 577, 752
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	188, 577
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	224, 905
NciI	CCSGG	1 cut(s)	752
NlaIII	CATG	5 cut(s)	244, 349, 491, 709, 871
NlaIV	GGNNCC	2 cut(s)	145, 185
NmuCI	GTSAC	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	768
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	4 cut(s)	72, 265, 776, 919
PfoI	TCCNGGA	1 cut(s)	186
PleI	GAGTC	3 cut(s)	298, 552, 883
PpsI	GAGTC	3 cut(s)	298, 552, 883
PshAI	GACNNNNGTC	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	186, 575
PspGI	CCWGG	2 cut(s)	186, 575
PspN4I	GGNNCC	2 cut(s)	145, 185
PspPI	GGNCC	2 cut(s)	24, 484
PsuI	RGATCY	4 cut(s)	119, 143, 183, 204
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	2 cut(s)	458, 480
Sau96I	GGNCC	2 cut(s)	24, 484
SchI	GAGTC	3 cut(s)	298, 553, 884
ScrFI	CCNGG	3 cut(s)	188, 577, 752
SduI	GDGCHC	1 cut(s)	901
SfaNI	GCATC	1 cut(s)	605
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	4 cut(s)	149, 364, 736, 783
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	9, 169
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	186, 575, 750
TaaI	ACNGT	4 cut(s)	17, 114, 559, 905
TaqI	TCGA	3 cut(s)	392, 858, 891
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	4 cut(s)	149, 364, 736, 783
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	4 cut(s)	72, 265, 776, 919
Tru1I	TTAA	2 cut(s)	458, 480
Tru9I	TTAA	2 cut(s)	458, 480
TscAI	CASTG	2 cut(s)	802, 910
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	74, 576, 985
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	802, 910
VneI	GTGCAC	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.