AT5G06080

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012743
Physical Location & Seq
Reverse (-)
1830671 .. 1831467
797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06080.1

Sequence Viewer

Length: 534 bp
ATGGCAAGTCATGGATCATCTTGTGGAGCATGCAAGTTTCTAAGGAGGAAATGCAACCGCGACTGCGTCTTCTCGCCTTACTTCAGCTACGAACAAGCCTCTTCCCATTTCGCAGCGGTTCACAAAGTCTTCGGCGCAAGTAATGTCTCTAAACATTTGCTTCATTTGCCTCAACATCAAAGAAACATCGCTGCTATCACCATCTCCTACGAGGCTCTCTCTCGCATGCGTGATCCTGTTTATGGCTGCGTTGCTCACATCTTCGCTCTTCATCAACAGGTTGTGACTTTGCAAGAAGAGATTGAGTTTCTCGGGTCACAGATGAAGAATTTTTCATACTCTAATCAAAACGGATCACAACTTAACAACATACCGGAGTTTGTGAATCAGATGACTATGGCCACGACCAATTTCGTCGACGAGAGTGTTTTGAACAATGCCGACGGAAGAAACTGCTATGATGGGTTCTTCACGAACTCAGAGGAAATGCTCGTGAATCATCAATGGCTCCAGAACATGGATTATTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

177

Amino Acids

20.24

Weight (kDa)

6.28

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 103 2.8e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 517
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 60
AciI CCGC 2 cut(s) 58, 116
AclWI GGATC 3 cut(s) 22, 227, 361
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 242, 517
AgsI TTSAA 1 cut(s) 433
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 3 cut(s) 22, 227, 361
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 3 cut(s) 113, 191, 246
ApoI RAATTY 1 cut(s) 328
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 401
BauI CACGAG 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 61, 121
BbvI GCAGC 3 cut(s) 125, 178, 233
BccI CCATC 2 cut(s) 209, 455
BcoDI GTCTC 1 cut(s) 151
BisI GCNGC 3 cut(s) 114, 192, 247
BlsI GCNGC 3 cut(s) 115, 193, 248
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 509
BpiI GAAGAC 2 cut(s) 61, 121
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 517
BseLI CCNNNNNNNGG 2 cut(s) 242, 517
BseMII CTCAG 1 cut(s) 492
BseXI GCAGC 3 cut(s) 125, 178, 233
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 242, 517
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 3 cut(s) 14, 232, 353
BspACI CCGC 2 cut(s) 58, 116
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 491
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 3 cut(s) 22, 227, 361
BspQI GCTCTTC 1 cut(s) 273
BssMI GATC 3 cut(s) 14, 232, 353
BssSI CACGAG 1 cut(s) 491
Bst2BI CACGAG 1 cut(s) 491
Bst6I CTCTTC 3 cut(s) 106, 273, 291
BstC8I GCNNGC 2 cut(s) 31, 227
BstDEI CTNAG 2 cut(s) 41, 478
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 17, 235, 356
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 14, 232, 353
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 2 cut(s) 33, 229
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 125, 178, 233
BstV2I GAAGAC 2 cut(s) 61, 121
BsuRI GGCC 1 cut(s) 401
BtgZI GCGATG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 31, 227
CfoI GCGC 1 cut(s) 137
CseI GACGC 1 cut(s) 55
CviAII CATG 4 cut(s) 11, 30, 226, 517
CviJI RGCY 6 cut(s) 87, 98, 215, 246, 401, 508
CviKI_1 RGCY 6 cut(s) 87, 98, 215, 246, 401, 508
DdeI CTNAG 2 cut(s) 41, 478
DpnI GATC 3 cut(s) 16, 234, 355
DpnII GATC 3 cut(s) 14, 232, 353
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 106, 273, 291
EarI CTCTTC 3 cut(s) 106, 273, 291
Eco57I CTGAAG 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 311
FaeI CATG 4 cut(s) 14, 33, 229, 520
FaiI YATR 9 cut(s) 12, 31, 227, 243, 337, 371, 398, 459, 518
FatI CATG 4 cut(s) 10, 29, 225, 516
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 114, 192, 247
Fsp4HI GCNGC 3 cut(s) 114, 192, 247
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 114, 192, 247
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 1 cut(s) 401
HapII CCGG 1 cut(s) 374
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 14, 33, 229, 520
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 385, 496
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 121, 418
Hpy188I TCNGA 2 cut(s) 390, 481
Hpy188III TCNNGA 3 cut(s) 472, 493, 511
Hpy8I GTNNAC 2 cut(s) 121, 418
Hpy99I CGWCG 3 cut(s) 419, 422, 446
HpyCH4V TGCA 3 cut(s) 33, 54, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 41, 478
Hsp92II CATG 4 cut(s) 14, 33, 229, 520
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 14, 232, 353
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 26, 513
LpnPI CCDG 4 cut(s) 249, 263, 387, 524
Lsp1109I GCAGC 3 cut(s) 125, 178, 233
MaeIII GTNAC 2 cut(s) 283, 315
MalI GATC 3 cut(s) 16, 234, 355
MboI GATC 3 cut(s) 14, 232, 353
MboII GAAGA 9 cut(s) 61, 93, 121, 253, 260, 308, 337, 459, 460
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 328, 409
MluNI TGGCCA 1 cut(s) 401
MnlI CCTC 5 cut(s) 39, 109, 180, 205, 475
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 374
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 3 cut(s) 14, 232, 353
NlaIII CATG 4 cut(s) 14, 33, 229, 520
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 2 cut(s) 283, 315
NspI RCATGY 2 cut(s) 33, 229
PaeI GCATGC 2 cut(s) 33, 229
PciSI GCTCTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 385, 496
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 3 cut(s) 115, 193, 248
PspN4I GGNNCC 1 cut(s) 509
PsyI GACNNNGTC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 114, 192, 247
Sau3AI GATC 3 cut(s) 14, 232, 353
SetI ASST 2 cut(s) 89, 282
SgrDI CGTCGACG 1 cut(s) 416
SphI GCATGC 2 cut(s) 33, 229
Sse9I AATT 2 cut(s) 328, 409
SsiI CCGC 2 cut(s) 58, 116
TaqI TCGA 1 cut(s) 417
TasI AATT 2 cut(s) 328, 409
TfiI GAWTC 2 cut(s) 385, 496
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 2 cut(s) 283, 315
TseI GCWGC 3 cut(s) 113, 191, 246
Tsp45I GTSAC 2 cut(s) 283, 315
TspDTI ATGAA 4 cut(s) 152, 260, 324, 338
TspGWI ACGGA 2 cut(s) 366, 459
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 517
XapI RAATTY 1 cut(s) 328
XceI RCATGY 2 cut(s) 33, 229
XmiI GTMKAC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.