pycom01g15910

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012743
Physical Location & Seq
Forward (+)
15629480 .. 15630229
750 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15910.1

Sequence Viewer

Length: 657 bp
ATGGCAGGATTAGGCTCTTCATGTGGAGCATGCAAATTCCTACGGCGAAAATGCACAAGCGAATGCATTTTCGCTCCTTACTTCTGCTACGACCAAGCTGCCGACCACTTTGCAGCAGTACACAAAGTGTTTGGTGCAAGCAATGTGTCCAAGCTGCTACTACACTTACCGGTGCAAAATCGAAGTGATGCTGCCATCACCATGTCGTATGAAGCGCTAGCTCGAATGCGTGATCCTGTGTATGGATGTGTCTCGCAAATCTTTGCACTCCAACAACAGGTTGCGTACTTACAAGAGGAGATCGAAACTCTTGGGAGCCAAATGGTTGATTTTGCAACTTGCCATCCAAGTAATAGCAACACATTCGTTGATCAGTTGCAAGTATTTTCACAACATGATGCTGTTGACACACAACATATCCAGAATCAATTACCAGAATCACCAATATTTCCACACATAGGAAGTGCAGCTGCCAACCAAGGGTTTAACGGTGAGATGGATATAGAGATGCCTCCTTTACAGGAATGGGAAGAAGTGAACTTAATTGGGGATCACTCTACACCAGATCCTTTAAAAAGATTTCTTGAAAGCATGGAGCAAGACAACTTGGGAAACAATCCATGGCCAAATAAGACTGCTACATGGGATTTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

4.76

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 103 2.9e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 227, 558, 560
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 120, 287
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 4 cut(s) 242, 277, 458, 480
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 587
AluBI AGCT 4 cut(s) 98, 154, 221, 470
AluI AGCT 4 cut(s) 98, 154, 221, 470
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 3 cut(s) 227, 558, 560
Aor51HI AGCGCT 1 cut(s) 216
AoxI GGCC 1 cut(s) 623
ApeKI GCWGC 6 cut(s) 98, 113, 154, 191, 467, 470
ApoI RAATTY 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 3 cut(s) 190, 432, 503
AsuNHI GCTAGC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 625
BbvI GCAGC 6 cut(s) 85, 125, 141, 178, 457, 479
BccI CCATC 3 cut(s) 203, 351, 490
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 6 cut(s) 80, 92, 114, 126, 346, 380
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 218
BisI GCNGC 6 cut(s) 99, 114, 155, 192, 468, 471
BlsI GCNGC 6 cut(s) 100, 115, 156, 193, 469, 472
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 3 cut(s) 178, 388, 498
BmtI GCTAGC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 478, 620
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 277, 458, 480
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 478, 620
BseGI GGATG 2 cut(s) 251, 343
BseLI CCNNNNNNNGG 4 cut(s) 242, 277, 458, 480
BseMI GCAATG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 6 cut(s) 85, 125, 141, 178, 457, 479
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 1 cut(s) 625
BshTI ACCGGT 1 cut(s) 169
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 242, 277, 458, 480
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 68, 231
BsnI GGCC 1 cut(s) 625
Bsp143I GATC 5 cut(s) 232, 300, 370, 550, 565
Bsp19I CCATGG 1 cut(s) 620
BspANI GGCC 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 317
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 3 cut(s) 227, 558, 560
BspQI GCTCTTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 478, 620
BssMI GATC 5 cut(s) 232, 300, 370, 550, 565
BssT1I CCWWGG 2 cut(s) 478, 620
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 31, 139, 219
BstDSI CCRYGG 1 cut(s) 620
BstF5I GGATG 2 cut(s) 251, 343
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 5 cut(s) 235, 303, 373, 553, 568
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 5 cut(s) 232, 300, 370, 550, 565
BstNSI RCATGY 1 cut(s) 33
BstV1I GCAGC 6 cut(s) 85, 125, 141, 178, 457, 479
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 620
BtsCI GGATG 2 cut(s) 251, 343
Cac8I GCNNGC 3 cut(s) 31, 139, 219
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 169
Csp6I GTAC 2 cut(s) 119, 286
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 7 cut(s) 21, 30, 202, 395, 592, 621, 642
CviJI RGCY 7 cut(s) 15, 98, 154, 221, 318, 470, 625
CviKI_1 RGCY 7 cut(s) 15, 98, 154, 221, 318, 470, 625
CviQI GTAC 2 cut(s) 119, 286
DpnI GATC 5 cut(s) 234, 302, 372, 552, 567
DpnII GATC 5 cut(s) 232, 300, 370, 550, 565
DraI TTTAAA 1 cut(s) 573
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 623
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 478, 620
Eco47III AGCGCT 1 cut(s) 216
EcoT14I CCWWGG 2 cut(s) 478, 620
EcoT22I ATGCAT 1 cut(s) 68
ErhI CCWWGG 2 cut(s) 478, 620
FaeI CATG 7 cut(s) 24, 33, 205, 398, 595, 624, 645
FatI CATG 7 cut(s) 20, 29, 201, 394, 591, 620, 641
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 99, 114, 155, 192, 468, 471
FokI GGATG 2 cut(s) 258, 330
Fsp4HI GCNGC 6 cut(s) 99, 114, 155, 192, 468, 471
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 216
GluI GCNGC 6 cut(s) 99, 114, 155, 192, 468, 471
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 625
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 217
Hin1II CATG 7 cut(s) 24, 33, 205, 398, 595, 624, 645
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 2 cut(s) 424, 437
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 190, 432, 503
Hpy166II GTNNAC 3 cut(s) 121, 406, 538
Hpy188III TCNNGA 2 cut(s) 421, 584
Hpy8I GTNNAC 3 cut(s) 121, 406, 538
HpyCH4III ACNGT 1 cut(s) 491
Hsp92II CATG 7 cut(s) 24, 33, 205, 398, 595, 624, 645
HspAI GCGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 5 cut(s) 232, 300, 370, 550, 565
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 4 cut(s) 26, 79, 315, 595
LpnPI CCDG 7 cut(s) 183, 249, 263, 434, 447, 506, 576
Lsp1109I GCAGC 6 cut(s) 85, 125, 141, 178, 457, 479
LweI GCATC 3 cut(s) 178, 388, 498
MaeI CTAG 1 cut(s) 218
MalI GATC 5 cut(s) 234, 302, 372, 552, 567
MboI GATC 5 cut(s) 232, 300, 370, 550, 565
MboII GAAGA 2 cut(s) 9, 542
MflI RGATCY 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 3 cut(s) 35, 428, 543
MluNI TGGCCA 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 2 cut(s) 289, 522
Mox20I TGGCCA 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 68
MscI TGGCCA 1 cut(s) 625
MseI TTAA 3 cut(s) 486, 542, 572
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 625
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 2 cut(s) 68, 231
NcoI CCATGG 1 cut(s) 620
NdeII GATC 5 cut(s) 232, 300, 370, 550, 565
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 7 cut(s) 24, 33, 205, 398, 595, 624, 645
NlaIV GGNNCC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 22
PctI GAATGC 2 cut(s) 68, 231
PfeI GAWTC 2 cut(s) 424, 437
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 6 cut(s) 100, 115, 156, 193, 469, 472
PspN4I GGNNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 120, 287
RsaNI GTAC 2 cut(s) 119, 286
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 486, 542, 572
SatI GCNGC 6 cut(s) 99, 114, 155, 192, 468, 471
Sau3AI GATC 5 cut(s) 232, 300, 370, 550, 565
SetI ASST 5 cut(s) 100, 156, 223, 282, 472
SfaNI GCATC 3 cut(s) 178, 388, 498
SmiMI CAYNNNNRTG 1 cut(s) 200
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 35, 428, 543
SspI AATATT 1 cut(s) 447
SspMI CTAG 1 cut(s) 218
StyI CCWWGG 2 cut(s) 478, 620
TaaI ACNGT 1 cut(s) 491
TaqI TCGA 3 cut(s) 181, 223, 303
TasI AATT 3 cut(s) 35, 428, 543
TatI WGTACW 1 cut(s) 118
TfiI GAWTC 2 cut(s) 424, 437
Tru1I TTAA 3 cut(s) 486, 542, 572
Tru9I TTAA 3 cut(s) 486, 542, 572
TseI GCWGC 6 cut(s) 98, 113, 154, 191, 467, 470
TspDTI ATGAA 2 cut(s) 9, 225
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 33
XspI CTAG 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.