Rroxscaffold_4G00288860

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012743
Physical Location & Seq
Reverse (-)
9521010 .. 9522170
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288860.1

Sequence Viewer

Length: 690 bp
ATGACAGGATTGGGTTCTTCATGTGGAGCATGCAAGTTTCTGAGGAGAAAATGCACAAGTGAGTGTGTGTTTGCTCCTTACTTCTGCTATGACCAAGCCGCAACCCATTTTTCAGCTGTGCACAAAGTGTTTGGTGCAAGTAATGTCTCGAAGCTACTGCTACACTTACCAGTACAACATCGAAGTGATGCTGCTCTCACCATGTCTTATGAAGCAATAGCTCGGATGCGTGATCCGATTTATGGATGTGTTTCACAAATCTTTGCACTTCAACAGCAGGTTGCGTACTTGCAGGAGGAGATTGAAACTCTTCTGGGGAACCAAATGATTAACTTCGCATCTGGGAATTCAAGTACTTGTGGAAGTTCTGAAGCAAATAGTAACTCCAACTTATTCAATGGGTTACAAGAATTTTCACAACAATATGATACTGCTGTTGACACACAAAAGTTTCAGAACCAACCTGAACCACCAGTACTACTTCCACAAGTAGGAATAGCGAGTACCAACCAAAGCTTTAGTAGTCATGAGATGGATATTCAGATGCCTCCTTTACATGAATGGGAAGAAGTCAAGAAATTCGGTGATCACTCTATGCAAGATCCTTTAGAAAGATTTCTTGAAGGTATAGACCAAGAGAACTTCGGACACAATCTGTGGTTGAATGACCCTTCCATCGCCTGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

229

Amino Acids

25.61

Weight (kDa)

4.96

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 103 3.2e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 681
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 227, 596
AcsI RAATTY 3 cut(s) 346, 410, 578
AcuI CTGAAG 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 5 cut(s) 174, 287, 355, 477, 505
AfiI CCNNNNNNNGG 3 cut(s) 242, 491, 681
AgsI TTSAA 6 cut(s) 272, 305, 351, 397, 623, 664
AjnI CCWGG 1 cut(s) 680
AluBI AGCT 4 cut(s) 116, 154, 221, 516
AluI AGCT 4 cut(s) 116, 154, 221, 516
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 227, 596
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 3 cut(s) 346, 410, 578
Asp700I GAANNNNTTC 2 cut(s) 309, 615
AsuHPI GGTGA 2 cut(s) 190, 596
BaeGI GKGCMC 1 cut(s) 123
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 178
BccI CCATC 2 cut(s) 526, 683
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 682
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 99, 192
BlsI GCNGC 2 cut(s) 100, 193
BmcAI AGTACT 2 cut(s) 355, 477
Bme1390I CCNGG 1 cut(s) 682
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 682
BmsI GCATC 4 cut(s) 178, 216, 347, 534
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 491, 681
Bse1I ACTGG 2 cut(s) 170, 473
BseBI CCWGG 1 cut(s) 682
BseGI GGATG 2 cut(s) 231, 251
BseLI CCNNNNNNNGG 3 cut(s) 242, 491, 681
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 170, 473
BseRI GAGGAG 2 cut(s) 58, 311
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 3 cut(s) 242, 491, 681
BsmAI GTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 232, 586, 601
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 2 cut(s) 227, 596
BsrI ACTGG 2 cut(s) 170, 473
BssMI GATC 3 cut(s) 232, 586, 601
Bst2UI CCWGG 1 cut(s) 682
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 231, 251
BstKTI GATC 3 cut(s) 235, 589, 604
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 232, 586, 601
BstNI CCWGG 1 cut(s) 682
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BtgZI GCGATG 1 cut(s) 661
BtsCI GGATG 2 cut(s) 231, 251
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 526
Csp6I GTAC 5 cut(s) 173, 286, 354, 476, 504
CviAII CATG 5 cut(s) 21, 30, 202, 527, 557
CviJI RGCY 5 cut(s) 98, 116, 154, 221, 516
CviKI_1 RGCY 5 cut(s) 98, 116, 154, 221, 516
CviQI GTAC 5 cut(s) 173, 286, 354, 476, 504
DdeI CTNAG 1 cut(s) 41
DpnI GATC 3 cut(s) 234, 588, 603
DpnII GATC 3 cut(s) 232, 586, 601
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 680
FaeI CATG 5 cut(s) 24, 33, 205, 530, 560
FatI CATG 5 cut(s) 20, 29, 201, 526, 556
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 2 cut(s) 99, 192
FokI GGATG 2 cut(s) 238, 258
Fsp4HI GCNGC 2 cut(s) 99, 192
GluI GCNGC 2 cut(s) 99, 192
Hin1II CATG 5 cut(s) 24, 33, 205, 530, 560
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 514
HphI GGTGA 2 cut(s) 190, 596
Hpy166II GTNNAC 2 cut(s) 121, 439
Hpy188I TCNGA 7 cut(s) 42, 225, 237, 370, 456, 543, 647
Hpy188III TCNNGA 4 cut(s) 148, 527, 574, 620
Hpy8I GTNNAC 2 cut(s) 121, 439
HpyAV CCTTC 2 cut(s) 617, 681
HpyCH4V TGCA 7 cut(s) 33, 54, 121, 137, 266, 292, 598
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 5 cut(s) 24, 33, 205, 530, 560
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 232, 586, 601
LmnI GCTCC 2 cut(s) 26, 79
LpnPI CCDG 8 cut(s) 183, 263, 278, 299, 327, 477, 486, 667
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 4 cut(s) 178, 216, 347, 534
MaeIII GTNAC 2 cut(s) 380, 402
MalI GATC 3 cut(s) 234, 588, 603
MboI GATC 3 cut(s) 232, 586, 601
MboII GAAGA 3 cut(s) 9, 302, 578
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 3 cut(s) 346, 410, 578
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 3 cut(s) 36, 289, 558
MroXI GAANNNNTTC 2 cut(s) 309, 615
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 682
MvaI CCWGG 1 cut(s) 682
NdeII GATC 3 cut(s) 232, 586, 601
NlaIII CATG 5 cut(s) 24, 33, 205, 530, 560
NlaIV GGNNCC 1 cut(s) 320
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PagI TCATGA 1 cut(s) 526
PdmI GAANNNNTTC 2 cut(s) 309, 615
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 2 cut(s) 100, 193
Psp6I CCWGG 1 cut(s) 680
PspGI CCWGG 1 cut(s) 680
PspN4I GGNNCC 1 cut(s) 320
PsrI GAACNNNNNNTAC 2 cut(s) 459, 491
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 5 cut(s) 174, 287, 355, 477, 505
RsaNI GTAC 5 cut(s) 173, 286, 354, 476, 504
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 2 cut(s) 99, 192
Sau3AI GATC 3 cut(s) 232, 586, 601
ScaI AGTACT 2 cut(s) 355, 477
ScrFI CCNGG 1 cut(s) 682
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 118, 156, 223, 282, 466, 518, 628
SfaNI GCATC 4 cut(s) 178, 216, 347, 534
SmiMI CAYNNNNRTG 1 cut(s) 183
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 346, 410, 578
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 680
TaqI TCGA 2 cut(s) 149, 181
TasI AATT 3 cut(s) 346, 410, 578
TatI WGTACW 3 cut(s) 172, 353, 475
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 9, 225, 573
Van91I CCANNNNNTGG 1 cut(s) 681
VneI GTGCAC 1 cut(s) 119
XapI RAATTY 3 cut(s) 346, 410, 578
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 309, 615
ZrmI AGTACT 2 cut(s) 355, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.