Rorug01G0338900

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012743
Physical Location & Seq
Reverse (-)
45679105 .. 45679897
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0338900.1

Sequence Viewer

Length: 339 bp
ATGGTGGGGAATGTAGTTGGAAGTGGAGGTAGAGTGAACTTAGGAGCTGTGGGAAGGTTTGGCATTGTTGGATTTGGTAGAGATGGGATTTGGGTGCTTGGCAGAGATGGGATTTGTGTTGTGGGTTTTGGCAATGTTGGCAATTGTGGCAGTGAAGTTGGCATAGGCAGTGTGGAAGGCAGTGGAGGCAATGCACCCTTGGGAATCGGAATCGATGGAATTGATGTCTGCAACAGGTGCCTGGCGCCAAAGCTCATGTCAATGCTTGACAAACACAATGCTGCTACCATGATAGATAATAGGGAACAATGCATGAGGCCTGCCATTTTAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

112

Amino Acids

11.37

Weight (kDa)

5.73

Isoelectric Point (pI)

15.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 237, 244
AcyI GRCGYC 1 cut(s) 245
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 47, 253
AluI AGCT 2 cut(s) 47, 253
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspLEI GCGC 1 cut(s) 247
BanI GGYRCC 2 cut(s) 237, 244
BbvI GCAGC 1 cut(s) 268
BccI CCATC 3 cut(s) 77, 101, 209
BciT130I CCWGG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 239, 246
BmrFI CCNGG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse3DI GCAATG 2 cut(s) 139, 196
BseBI CCWGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 198
BseMI GCAATG 2 cut(s) 139, 196
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 2 cut(s) 237, 244
BshVI ATCGAT 1 cut(s) 213
BsnI GGCC 1 cut(s) 319
BspANI GGCC 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 239, 246
BspT107I GGYRCC 2 cut(s) 237, 244
BsrDI GCAATG 2 cut(s) 139, 196
BssECI CCNNGG 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstMWI GCNNNNNNNGC 4 cut(s) 138, 147, 186, 237
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 213
BtsI GCAGTG 3 cut(s) 157, 175, 187
BtsIMutI CAGTG 3 cut(s) 157, 175, 187
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 1 cut(s) 247
ClaI ATCGAT 1 cut(s) 213
CviAII CATG 3 cut(s) 256, 289, 313
CviJI RGCY 3 cut(s) 47, 253, 319
CviKI_1 RGCY 3 cut(s) 47, 253, 319
DdeI CTNAG 1 cut(s) 40
DinI GGCGCC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 314
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 259, 292, 316
FaiI YATR 4 cut(s) 164, 257, 290, 314
FatI CATG 3 cut(s) 255, 288, 312
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 319
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 3 cut(s) 259, 292, 316
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 2 cut(s) 204, 210
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 48, 170
HpyCH4V TGCA 3 cut(s) 194, 231, 312
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 147, 186, 237
HpyF3I CTNAG 1 cut(s) 40
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 3 cut(s) 259, 292, 316
HspAI GCGC 1 cut(s) 245
KasI GGCGCC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 220, 227, 254, 333
Lsp1109I GCAGC 1 cut(s) 268
MfeI CAATTG 1 cut(s) 142
MluCI AATT 2 cut(s) 142, 219
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 20, 179, 309
Mph1103I ATGCAT 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 138, 147, 186, 237
NarI GGCGCC 1 cut(s) 245
NlaIII CATG 3 cut(s) 259, 292, 316
NlaIV GGNNCC 2 cut(s) 239, 246
NsiI ATGCAT 1 cut(s) 314
PceI AGGCCT 1 cut(s) 319
PfeI GAWTC 2 cut(s) 204, 210
PkrI GCNGC 1 cut(s) 283
PluTI GGCGCC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 239, 246
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 242
SetI ASST 5 cut(s) 31, 49, 59, 239, 255
SfoI GGCGCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 142, 219
SseBI AGGCCT 1 cut(s) 319
SspDI GGCGCC 1 cut(s) 244
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 142, 219
TfiI GAWTC 2 cut(s) 204, 210
TscAI CASTG 3 cut(s) 157, 175, 187
TseI GCWGC 1 cut(s) 281
TspRI CASTG 3 cut(s) 157, 175, 187
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.