MD07G1202600.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012743
Physical Location & Seq
Forward (+)
28041974 .. 28042396
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1202600.v1.1.491

Sequence Viewer

Length: 423 bp
ATGACAGGATTAGGTTTTTCATGTGGAGCATGCAAATTCCTACGGCGAAAATGCACAAGCGAATGCGTGTTCGCTCCTTACTTCTGCTATGACCAAGCTGCAGACCACTTTGCAGCAGTGCACAAAGTGTTTGGTGCAAGCAATGTGTCCAAGATGCTACTACACTTACCGGTACAACATCGAAGTGATGCTGCCATCACCATGTCTTACGAAGCGCTAGCTCGAATGCACGATCCTGTGTATGGATGTGTCTCACAAATCTTTGCACTCCAGCAACAGGTTTCCATGCTGCTAATTTACTCCAAACTTCTCACTTATACCTGTCAATACATAATTTTGTGCGCGCCATTGATCCATCAACCTTTCCTTGCAGGTCGCATACTTACAAGAGGAGATCGAAACTCTTGGGAGCCAAATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

8.66

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 97 5.5e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AccII CGCG 1 cut(s) 344
AclWI GGATC 2 cut(s) 227, 346
AcsI RAATTY 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 1 cut(s) 174
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 242, 277
AgeI ACCGGT 1 cut(s) 169
AluBI AGCT 2 cut(s) 98, 221
AluI AGCT 2 cut(s) 98, 221
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 227, 346
Aor51HI AGCGCT 1 cut(s) 216
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 4 cut(s) 98, 113, 191, 289
ApoI RAATTY 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 3 cut(s) 217, 344, 346
AsuHPI GGTGA 1 cut(s) 190
AsuNHI GCTAGC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 85, 125, 178, 276
BccI CCATC 2 cut(s) 203, 363
BceAI ACGGC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 4 cut(s) 99, 114, 192, 290
BlsI GCNGC 4 cut(s) 100, 115, 193, 291
BmiI GGNNCC 1 cut(s) 411
BmsI GCATC 2 cut(s) 144, 178
BmtI GCTAGC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 277
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 148
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 242, 277
BseMI GCAATG 1 cut(s) 148
BsePI GCGCGC 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 85, 125, 178, 276
Bsh1236I CGCG 1 cut(s) 344
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 242, 277
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 68, 231
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 232, 351, 394
BspFNI CGCG 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 362
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 2 cut(s) 227, 346
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssHII GCGCGC 1 cut(s) 342
BssMI GATC 3 cut(s) 232, 351, 394
BstC8I GCNNGC 4 cut(s) 31, 139, 219, 344
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 344
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 3 cut(s) 217, 344, 346
BstKTI GATC 3 cut(s) 235, 354, 397
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 232, 351, 394
BstNSI RCATGY 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 4 cut(s) 85, 125, 178, 276
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 4 cut(s) 31, 139, 219, 344
CfoI GCGC 3 cut(s) 217, 344, 346
Cfr10I RCCGGY 1 cut(s) 169
Csp6I GTAC 1 cut(s) 173
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 4 cut(s) 21, 30, 202, 286
CviJI RGCY 3 cut(s) 98, 221, 412
CviKI_1 RGCY 3 cut(s) 98, 221, 412
CviQI GTAC 1 cut(s) 173
DpnI GATC 3 cut(s) 234, 353, 396
DpnII GATC 3 cut(s) 232, 351, 394
DraIII CACNNNGTG 1 cut(s) 127
Eco47III AGCGCT 1 cut(s) 216
FaeI CATG 4 cut(s) 24, 33, 205, 289
FaiI YATR 9 cut(s) 22, 31, 90, 203, 243, 287, 318, 332, 380
FatI CATG 4 cut(s) 20, 29, 201, 285
Fnu4HI GCNGC 4 cut(s) 99, 114, 192, 290
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 4 cut(s) 99, 114, 192, 290
FspBI CTAG 1 cut(s) 218
GlaI GCGC 3 cut(s) 216, 343, 345
GluI GCNGC 4 cut(s) 99, 114, 192, 290
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 218
HapII CCGG 1 cut(s) 170
HhaI GCGC 3 cut(s) 217, 344, 346
Hin1II CATG 4 cut(s) 24, 33, 205, 289
Hin6I GCGC 3 cut(s) 215, 342, 344
HinP1I GCGC 3 cut(s) 215, 342, 344
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 9 cut(s) 33, 54, 101, 113, 121, 137, 229, 266, 371
Hsp92II CATG 4 cut(s) 24, 33, 205, 289
HspAI GCGC 3 cut(s) 215, 342, 344
Kzo9I GATC 3 cut(s) 232, 351, 394
LmnI GCTCC 3 cut(s) 26, 79, 409
LpnPI CCDG 6 cut(s) 183, 249, 263, 284, 334, 357
Lsp1109I GCAGC 4 cut(s) 85, 125, 178, 276
LweI GCATC 2 cut(s) 144, 178
MaeI CTAG 1 cut(s) 218
MalI GATC 3 cut(s) 234, 353, 396
MboI GATC 3 cut(s) 232, 351, 394
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 3 cut(s) 35, 294, 333
MnlI CCTC 1 cut(s) 383
MseI TTAA 1 cut(s) 421
MslI CAYNNNNRTG 2 cut(s) 183, 200
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 2 cut(s) 68, 231
MvnI CGCG 1 cut(s) 344
NdeII GATC 3 cut(s) 232, 351, 394
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 4 cut(s) 24, 33, 205, 289
NlaIV GGNNCC 1 cut(s) 411
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PauI GCGCGC 1 cut(s) 342
PctI GAATGC 2 cut(s) 68, 231
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 4 cut(s) 100, 115, 193, 291
PspN4I GGNNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 103
PteI GCGCGC 1 cut(s) 342
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 183, 200
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 4 cut(s) 99, 114, 192, 290
Sau3AI GATC 3 cut(s) 232, 351, 394
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 16, 100, 223, 282, 323, 364, 376
SfaNI GCATC 2 cut(s) 144, 178
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 183, 200
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 35, 294, 333
SspMI CTAG 1 cut(s) 218
TaqI TCGA 3 cut(s) 181, 223, 397
TasI AATT 3 cut(s) 35, 294, 333
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TscAI CASTG 1 cut(s) 123
TseI GCWGC 4 cut(s) 98, 113, 191, 289
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 123
VneI GTGCAC 1 cut(s) 119
XapI RAATTY 1 cut(s) 35
XceI RCATGY 1 cut(s) 33
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.