Prupe.2G238900_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012743
Physical Location & Seq
Forward (+)
25939342 .. 25940572
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G238900.1

Sequence Viewer

Length: 672 bp
ATGACAGGATTCGGCTCTTCATGTGGAGCATGCAAGTTCCTGAGGAGAAAATGCACAGGTGAATGTGTGTTTGCTCCTTACTTCTGCTATGACCAAGCTGCAGACCATTTTGCAGCAGTGCACAAGGTGTTTGGTGCAAGCAATGTGTCCAAGCTGCTGTTACACTTACCGGTACAAAATCGAAGTGATGCTGCTATCACCATGTCTTATGAAGCACTAGCTCGAATGCGCGACCCTGTGTATGGATGTTTCTCACAAATCTTTGCACTCCAACAACAGGTTGTCTACTTACAAGAGGAGATTGAAACTCTCGGGAATCAAATGGTTAATTTTGCAACTGGCCATTCAAGTAACTCATTCAGTGAGCTACAAGTATTTTCACAACATGATGCTGTTGAGACACAATATCTTCAGAGTCAATTACCAGAACCGCTACTACTTCCCGTTATGGAAAATGCAACTGCCAACCAGGCATTTAACAGTCAGATGGATATACAGATGCTTCCTTTGCATGAATGGGAAGAAGTAAACCTATTTGGTGATCAGTCTGTGCCTGATCCTTTAGAGAGATTTCTTGAAGGTCCCCAAGAGAACTTGGGACATAATCCATGGTTGAATGAGACTGCCAACACCAGGAACTATAATAAAGGTTCTAGGTGGGATTTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

224

Amino Acids

25.23

Weight (kDa)

4.88

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 431
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 3 cut(s) 242, 277, 633
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 4 cut(s) 305, 348, 578, 616
AjnI CCWGG 2 cut(s) 468, 632
AluBI AGCT 4 cut(s) 98, 154, 221, 367
AluI AGCT 4 cut(s) 98, 154, 221, 367
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 392, 614
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 4 cut(s) 98, 113, 154, 191
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 3 cut(s) 71, 190, 551
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 85, 125, 141, 178
BccI CCATC 1 cut(s) 481
BciT130I CCWGG 2 cut(s) 470, 634
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 392, 614
BfaI CTAG 2 cut(s) 218, 654
BfmI CTRYAG 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 4 cut(s) 99, 114, 155, 192
BlsI GCNGC 4 cut(s) 100, 115, 156, 193
Bme1390I CCNGG 2 cut(s) 470, 634
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 583
BmrFI CCNGG 2 cut(s) 470, 634
BmsI GCATC 3 cut(s) 178, 379, 489
BsaJI CCNNGG 1 cut(s) 608
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 277, 633
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 343
Bse21I CCTNAGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 2 cut(s) 470, 634
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 3 cut(s) 242, 277, 633
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 58, 311
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 85, 125, 141, 178
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 342
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 2 cut(s) 567, 612
BslI CCNNNNNNNGG 3 cut(s) 242, 277, 633
BsmAI GTCTC 2 cut(s) 392, 614
BsmFI GGGAC 2 cut(s) 567, 612
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 541, 556
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 33
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 583
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 2 cut(s) 541, 556
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 470, 634
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 31, 139
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 544, 559
BstMAI GTCTC 2 cut(s) 392, 614
BstMBI GATC 2 cut(s) 541, 556
BstMWI GCNNNNNNNGC 2 cut(s) 470, 508
BstNI CCWGG 2 cut(s) 470, 634
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 468, 632
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 85, 125, 141, 178
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 367
Cac8I GCNNGC 2 cut(s) 31, 139
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 173
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 6 cut(s) 21, 30, 202, 386, 512, 609
CviJI RGCY 6 cut(s) 15, 98, 154, 221, 342, 367
CviKI_1 RGCY 6 cut(s) 15, 98, 154, 221, 342, 367
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 543, 558
DpnII GATC 2 cut(s) 541, 556
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 395
Eco81I CCTNAGG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 468, 632
EcoT14I CCWWGG 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 6 cut(s) 24, 33, 205, 389, 515, 612
FaqI GGGAC 2 cut(s) 567, 612
FatI CATG 6 cut(s) 20, 29, 201, 385, 511, 608
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 4 cut(s) 99, 114, 155, 192
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 4 cut(s) 99, 114, 155, 192
FspBI CTAG 2 cut(s) 218, 654
GlaI GCGC 1 cut(s) 230
GluI GCNGC 4 cut(s) 99, 114, 155, 192
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 231
Hin1II CATG 6 cut(s) 24, 33, 205, 389, 515, 612
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 3 cut(s) 9, 316, 415
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 71, 190, 551
Hpy166II GTNNAC 3 cut(s) 121, 286, 529
Hpy188I TCNGA 2 cut(s) 414, 486
Hpy188III TCNNGA 3 cut(s) 40, 313, 575
Hpy8I GTNNAC 3 cut(s) 121, 286, 529
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 508
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 6 cut(s) 24, 33, 205, 389, 515, 612
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 541, 556
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 26, 79
Lsp1109I GCAGC 4 cut(s) 85, 125, 141, 178
LweI GCATC 3 cut(s) 178, 379, 489
MaeI CTAG 2 cut(s) 218, 654
MaeIII GTNAC 2 cut(s) 159, 350
MalI GATC 2 cut(s) 543, 558
MboI GATC 2 cut(s) 541, 556
MboII GAAGA 3 cut(s) 9, 401, 533
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 2 cut(s) 328, 419
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 2 cut(s) 36, 289
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 2 cut(s) 327, 477
Msp20I TGGCCA 1 cut(s) 342
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 470, 634
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 2 cut(s) 470, 634
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 470, 508
NcoI CCATGG 1 cut(s) 608
NdeII GATC 2 cut(s) 541, 556
NlaIII CATG 6 cut(s) 24, 33, 205, 389, 515, 612
NlaIV GGNNCC 1 cut(s) 583
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 22
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 9, 316
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 4 cut(s) 100, 115, 156, 193
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 468, 632
PspGI CCWGG 2 cut(s) 468, 632
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PsrI GAACNNNNNNTAC 2 cut(s) 420, 452
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 327, 477
SatI GCNGC 4 cut(s) 99, 114, 155, 192
Sau3AI GATC 2 cut(s) 541, 556
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 470, 634
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 3 cut(s) 178, 379, 489
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 581
SphI GCATGC 1 cut(s) 33
Sse9I AATT 2 cut(s) 328, 419
SsiI CCGC 1 cut(s) 431
SspMI CTAG 2 cut(s) 218, 654
StyD4I CCNGG 2 cut(s) 468, 632
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 2 cut(s) 181, 223
TasI AATT 2 cut(s) 328, 419
TfiI GAWTC 2 cut(s) 9, 316
Tru1I TTAA 2 cut(s) 327, 477
Tru9I TTAA 2 cut(s) 327, 477
TscAI CASTG 2 cut(s) 123, 367
TseI GCWGC 4 cut(s) 98, 113, 154, 191
TspDTI ATGAA 3 cut(s) 9, 225, 528
TspRI CASTG 2 cut(s) 123, 367
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 581
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 2 cut(s) 218, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.