RchiOBHm_Chr1g0368101

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012743
Physical Location & Seq
Forward (+)
58320349 .. 58320642
294 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59247

Sequence Viewer

Length: 294 bp
ATGACAGGATTGGGTTCTTCATGTGGAGCATGCAGGTTTCTGAGGAGAAAATGCACAAGTGAGTGTGTGTTTGCTCCTTACTTCTGCTATGACCAAGCTGCAACCCATTTTTCAGCTGTGCACAAAGTGTTTGGTGCAAGTAATGTCTCGAAGCTACTGCTACACTTACCAGTACAGCATCGAAGTGATGCTGCTCTCACCATGTCTTATGAAGCAATAGCTCGGATGCGTGATCCGATTTATGGGTGTGTTTCACAAATCTTTGCACTTCAACAGCAGGTAACCTTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

8.78

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 95 2.4e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 24, 268
AclWI GGATC 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 4 cut(s) 98, 116, 154, 221
AluI AGCT 4 cut(s) 98, 116, 154, 221
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 227
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 98, 191
AsuHPI GGTGA 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 85, 178
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcoDI GTCTC 1 cut(s) 151
BfuAI ACCTGC 2 cut(s) 24, 268
BisI GCNGC 2 cut(s) 99, 192
BlsI GCNGC 2 cut(s) 100, 193
BmsI GCATC 3 cut(s) 178, 187, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 85, 178
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 33
BspMI ACCTGC 2 cut(s) 24, 268
BspPI GGATC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 170
BssMI GATC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 41
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 33
BstPI GGTNACC 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 85, 178
BtsCI GGATG 1 cut(s) 231
BveI ACCTGC 2 cut(s) 24, 268
Cac8I GCNNGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 173
CviAII CATG 3 cut(s) 21, 30, 202
CviJI RGCY 4 cut(s) 98, 116, 154, 221
CviKI_1 RGCY 4 cut(s) 98, 116, 154, 221
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DraIII CACNNNGTG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
FaeI CATG 3 cut(s) 24, 33, 205
FaiI YATR 6 cut(s) 22, 31, 90, 203, 210, 243
FatI CATG 3 cut(s) 20, 29, 201
Fnu4HI GCNGC 2 cut(s) 99, 192
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 99, 192
GluI GCNGC 2 cut(s) 99, 192
Hin1II CATG 3 cut(s) 24, 33, 205
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 42, 225, 237
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 6 cut(s) 33, 54, 101, 121, 137, 266
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 3 cut(s) 24, 33, 205
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 26, 79
LpnPI CCDG 3 cut(s) 19, 183, 263
Lsp1109I GCAGC 2 cut(s) 85, 178
LweI GCATC 3 cut(s) 178, 187, 216
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 123
MnlI CCTC 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 116
NdeII GATC 1 cut(s) 232
NlaIII CATG 3 cut(s) 24, 33, 205
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PkrI GCNGC 2 cut(s) 100, 193
PspEI GGTNACC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 2 cut(s) 99, 192
Sau3AI GATC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 38, 100, 118, 156, 223, 282, 287
SfaNI GCATC 3 cut(s) 178, 187, 216
SmiMI CAYNNNNRTG 1 cut(s) 183
SphI GCATGC 1 cut(s) 33
TaqI TCGA 2 cut(s) 149, 181
TatI WGTACW 1 cut(s) 172
TseI GCWGC 2 cut(s) 98, 191
TspDTI ATGAA 2 cut(s) 9, 225
VneI GTGCAC 1 cut(s) 119
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.