FvH4_7g22920

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012743
Physical Location & Seq
Forward (+)
18010296 .. 18011540
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22920.t1

Sequence Viewer

Length: 711 bp
ATGACAGGACTTGGTTCTTCATGTGGAGCATGCAAGTTTCTGAGGAGAAAATGCACAAGTGAATGTGTGTTTGCTCCTTACTTCTGCTATGACCAAGCTGCAACCCATTTTGCAGCTGTGCACAAAGTGTTTGGTGCAAGTAATGTCTCCAAGCTTCTGCTGCACTTGCCAGTACAACATCGAAGCGATGCTGCTCTCACCATGTCTTATGAAGCACTAGCTCGGATGCGTGATCCGATATATGGATGTGTTTCACAAATCTTTGCACTCCAACAGCAGGTTGCGTACTTACAGGAGGAGATCGAAACTCTTCTACAGAACCAAATGGTTAGCTTGGTATCTGCAAATTCAAGTGCTTGTGGAAGTTCTGAAGGAAATAGTAACTCCAACACATTCAGGGGGTTACAAGTATTTCCAGCACAACAATATGACATTGCTGTTGACAGACAAAAGTTTCAGAACCAACCAGAACCACCAATACTACTGCCGCAAGTAGGAGTAGCAAGTACCAACCAAGGCTTTAGTAGTCATGATCATCAGATGGATATTCAGATGCCTACTTTATACGAATGGGAAGAAGTCAAGACATTCGGTGACCGCTCCACGCAAGACTCATTAGAAAAGTTTCTTGAGGATATAGACCAAGAGAACTTGGGACATAATCCCTGGTTGAATGACCCTTCCATCGCCTGGAACTGGAAAAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

237

Amino Acids

26.52

Weight (kDa)

5.22

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 103 1.7e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 690
AccBSI CCGCTC 1 cut(s) 600
AciI CCGC 2 cut(s) 488, 598
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 3 cut(s) 174, 287, 508
AfiI CCNNNNNNNGG 5 cut(s) 242, 277, 494, 690, 696
AgsI TTSAA 2 cut(s) 351, 673
AjnI CCWGG 2 cut(s) 665, 689
AluBI AGCT 5 cut(s) 98, 116, 154, 221, 333
AluI AGCT 5 cut(s) 98, 116, 154, 221, 333
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 227
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 4 cut(s) 98, 113, 160, 191
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 2 cut(s) 309, 624
AsuHPI GGTGA 2 cut(s) 190, 605
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 85, 125, 147, 178
BccI CCATC 2 cut(s) 535, 692
BciT130I CCWGG 2 cut(s) 667, 691
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 5 cut(s) 99, 114, 161, 192, 488
BlsI GCNGC 5 cut(s) 100, 115, 162, 193, 489
Bme1390I CCNGG 2 cut(s) 667, 691
BmrFI CCNGG 2 cut(s) 667, 691
BmsI GCATC 3 cut(s) 178, 216, 543
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 514, 665
Bsc4I CCNNNNNNNGG 5 cut(s) 242, 277, 494, 690, 696
Bse1I ACTGG 2 cut(s) 170, 701
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 2 cut(s) 667, 691
BseDI CCNNGG 2 cut(s) 514, 665
BseGI GGATG 2 cut(s) 231, 251
BseLI CCNNNNNNNGG 5 cut(s) 242, 277, 494, 690, 696
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 170, 701
BseRI GAGGAG 2 cut(s) 58, 311
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 85, 125, 147, 178
BsgI GTGCAG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 5 cut(s) 242, 277, 494, 690, 696
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 669
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 232, 300, 532
BspACI CCGC 2 cut(s) 488, 598
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 2 cut(s) 170, 701
BssECI CCNNGG 2 cut(s) 514, 665
BssMI GATC 3 cut(s) 232, 300, 532
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 667, 691
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 41
BstEII GGTNACC 1 cut(s) 593
BstF5I GGATG 2 cut(s) 231, 251
BstKTI GATC 3 cut(s) 235, 303, 535
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 232, 300, 532
BstMWI GCNNNNNNNGC 2 cut(s) 160, 166
BstNI CCWGG 2 cut(s) 667, 691
BstNSI RCATGY 1 cut(s) 33
BstPI GGTNACC 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 665, 689
BstSFI CTRYAG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 85, 125, 147, 178
BtgZI GCGATG 2 cut(s) 201, 670
BtsCI GGATG 2 cut(s) 231, 251
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 529
Csp6I GTAC 3 cut(s) 173, 286, 507
CviAII CATG 4 cut(s) 21, 30, 202, 530
CviJI RGCY 6 cut(s) 98, 116, 154, 221, 333, 519
CviKI_1 RGCY 6 cut(s) 98, 116, 154, 221, 333, 519
CviQI GTAC 3 cut(s) 173, 286, 507
DdeI CTNAG 1 cut(s) 41
DpnI GATC 3 cut(s) 234, 302, 534
DpnII GATC 3 cut(s) 232, 300, 532
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 390
Eco91I GGTNACC 1 cut(s) 593
EcoO65I GGTNACC 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 665, 689
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 4 cut(s) 24, 33, 205, 533
FaqI GGGAC 1 cut(s) 669
FatI CATG 4 cut(s) 20, 29, 201, 529
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 5 cut(s) 99, 114, 161, 192, 488
FokI GGATG 2 cut(s) 238, 258
Fsp4HI GCNGC 5 cut(s) 99, 114, 161, 192, 488
FspBI CTAG 1 cut(s) 218
GluI GCNGC 5 cut(s) 99, 114, 161, 192, 488
Hin1II CATG 4 cut(s) 24, 33, 205, 533
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 611
HphI GGTGA 2 cut(s) 190, 605
Hpy166II GTNNAC 2 cut(s) 121, 442
Hpy188I TCNGA 7 cut(s) 42, 225, 237, 370, 459, 540, 552
Hpy188III TCNNGA 3 cut(s) 530, 583, 629
Hpy8I GTNNAC 2 cut(s) 121, 442
HpyAV CCTTC 2 cut(s) 365, 690
HpyCH4V TGCA 9 cut(s) 33, 54, 101, 113, 121, 137, 163, 266, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 166
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 4 cut(s) 24, 33, 205, 533
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 3 cut(s) 232, 300, 532
LmnI GCTCC 3 cut(s) 26, 79, 605
Lsp1109I GCAGC 4 cut(s) 85, 125, 147, 178
LweI GCATC 3 cut(s) 178, 216, 543
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 380, 402, 593
MalI GATC 3 cut(s) 234, 302, 534
MbiI CCGCTC 1 cut(s) 600
MboI GATC 3 cut(s) 232, 300, 532
MboII GAAGA 3 cut(s) 9, 302, 587
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 2 cut(s) 295, 411
MnlI CCTC 3 cut(s) 36, 289, 625
MroXI GAANNNNTTC 2 cut(s) 309, 624
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 667, 691
MvaI CCWGG 2 cut(s) 667, 691
MwoI GCNNNNNNNGC 2 cut(s) 160, 166
NdeII GATC 3 cut(s) 232, 300, 532
NlaIII CATG 4 cut(s) 24, 33, 205, 533
NmuCI GTSAC 1 cut(s) 593
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PagI TCATGA 1 cut(s) 529
PdmI GAANNNNTTC 2 cut(s) 309, 624
PflMI CCANNNNNTGG 1 cut(s) 690
PkrI GCNGC 5 cut(s) 100, 115, 162, 193, 489
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
Psp6I CCWGG 2 cut(s) 665, 689
PspEI GGTNACC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 665, 689
PsrI GAACNNNNNNTAC 2 cut(s) 462, 494
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 174, 287, 508
RsaNI GTAC 3 cut(s) 173, 286, 507
SatI GCNGC 5 cut(s) 99, 114, 161, 192, 488
Sau3AI GATC 3 cut(s) 232, 300, 532
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 2 cut(s) 667, 691
SduI GDGCHC 1 cut(s) 123
SetI ASST 6 cut(s) 100, 118, 156, 223, 282, 335
SfaNI GCATC 3 cut(s) 178, 216, 543
SfcI CTRYAG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SphI GCATGC 1 cut(s) 33
Sse9I AATT 1 cut(s) 346
SsiI CCGC 2 cut(s) 488, 598
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 665, 689
StyI CCWWGG 1 cut(s) 514
TaqI TCGA 2 cut(s) 181, 303
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 172
TauI GCSGC 1 cut(s) 490
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 4 cut(s) 98, 113, 160, 191
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 9, 225
Van91I CCANNNNNTGG 1 cut(s) 690
VneI GTGCAC 1 cut(s) 119
XapI RAATTY 1 cut(s) 346
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 309, 624
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.