MD01G1138100.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0012743
Physical Location & Seq
Reverse (-)
24780628 .. 24781050
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1138100.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGCAGGATTAGGCTCTTCATGTGGAGCATGCAAATTCCTACGGCGAAAATGCACAAGCGAATGCATTTTCGCTCCTTACTTCTGCTACGACCAAGCTGCAGACCACTTTGCAGCAGTACACAAAGTGTTTGGTGCAAGCAATGTGTCCAAGCTGCTACTACACTTACCGGTGCAAAATCGAAGTGATGCTGCCATCACCATGTCGTATGAAGCGCTAGCTCGAATGCGTGATCCTGTGTATGGATGTGTCTCGCAAATCTATGCACTCCAACAACAGGTTTCCATGCTGCTAACCTACTCCAAACTTCTCACTTACACATGTCAATACATAATTTTGTGTAGGCCATTTACTCATCAGTCTTTCCTCGCAGGTCGCGTACTTACAAGAGGAGATCGAAACTCTTGGGAGCCAAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

141

Amino Acids

15.67

Weight (kDa)

8.97

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 98 4.7e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06080
fragaria_vesca FvH4_7g22920
malus_domestica MD01G1138100.v1.1 MD07G1202600.v1.1
prunus_persica Prupe.2G238900_v2.0.a1
pyrus_communis pycom01g15910
rosa_chinensis RchiOBHm_Chr1g0368101
rosa_laevigata RLG00000027240
rosa_multiflora Rmu_co8351427.1_g000001 Rmu_sc0006814.1_g000007 Rmu_sc0035888.1_g000007
rosa_roxburghii Rroxscaffold_4G00288860
rosa_rugosa Rorug01G0338900
rosa_samantha Rh1AG345900 Rh1BG308300 Rh1CG324000 Rh1DG340400
rosa_wichuraiana Rw1G030790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AccII CGCG 1 cut(s) 378
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 120, 381
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 242, 277
AflIII ACRYGT 1 cut(s) 320
AgeI ACCGGT 1 cut(s) 169
AluBI AGCT 3 cut(s) 98, 154, 221
AluI AGCT 3 cut(s) 98, 154, 221
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 216
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 5 cut(s) 98, 113, 154, 191, 289
ApoI RAATTY 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 190
AsuNHI GCTAGC 1 cut(s) 217
BbvI GCAGC 5 cut(s) 85, 125, 141, 178, 276
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 5 cut(s) 99, 114, 155, 192, 290
BlsI GCNGC 5 cut(s) 100, 115, 156, 193, 291
BmiI GGNNCC 1 cut(s) 411
BmsI GCATC 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 277
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 148
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 242, 277
BseMI GCAATG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 5 cut(s) 85, 125, 141, 178, 276
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 346
BshTI ACCGGT 1 cut(s) 169
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 242, 277
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 68, 231
BsnI GGCC 1 cut(s) 346
Bsp143I GATC 2 cut(s) 232, 394
BspANI GGCC 1 cut(s) 346
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 362
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssMI GATC 2 cut(s) 232, 394
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 3 cut(s) 31, 139, 219
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 235, 397
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 232, 394
BstNSI RCATGY 2 cut(s) 33, 324
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 5 cut(s) 85, 125, 141, 178, 276
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 31, 139, 219
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 169
Csp6I GTAC 2 cut(s) 119, 380
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 5 cut(s) 21, 30, 202, 286, 321
CviJI RGCY 6 cut(s) 15, 98, 154, 221, 346, 412
CviKI_1 RGCY 6 cut(s) 15, 98, 154, 221, 346, 412
CviQI GTAC 2 cut(s) 119, 380
DpnI GATC 2 cut(s) 234, 396
DpnII GATC 2 cut(s) 232, 394
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 5 cut(s) 24, 33, 205, 289, 324
FaiI YATR 9 cut(s) 22, 31, 203, 210, 243, 264, 287, 322, 332
FatI CATG 5 cut(s) 20, 29, 201, 285, 320
Fnu4HI GCNGC 5 cut(s) 99, 114, 155, 192, 290
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 5 cut(s) 99, 114, 155, 192, 290
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 216
GluI GCNGC 5 cut(s) 99, 114, 155, 192, 290
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 217
Hin1II CATG 5 cut(s) 24, 33, 205, 289, 324
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 8 cut(s) 33, 54, 66, 101, 113, 137, 175, 266
Hsp92II CATG 5 cut(s) 24, 33, 205, 289, 324
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 232, 394
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 3 cut(s) 26, 79, 409
LpnPI CCDG 4 cut(s) 183, 249, 263, 357
Lsp1109I GCAGC 5 cut(s) 85, 125, 141, 178, 276
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 218
MalI GATC 2 cut(s) 234, 396
MboI GATC 2 cut(s) 232, 394
MboII GAAGA 1 cut(s) 9
MluCI AATT 2 cut(s) 35, 333
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 2 cut(s) 377, 383
Mph1103I ATGCAT 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 2 cut(s) 68, 231
MvnI CGCG 1 cut(s) 378
NdeII GATC 2 cut(s) 232, 394
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 5 cut(s) 24, 33, 205, 289, 324
NlaIV GGNNCC 1 cut(s) 411
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 2 cut(s) 33, 324
PaeI GCATGC 1 cut(s) 33
PciI ACATGT 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 2 cut(s) 68, 231
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 5 cut(s) 100, 115, 156, 193, 291
PscI ACATGT 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 2 cut(s) 120, 381
RsaNI GTAC 2 cut(s) 119, 380
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 22
SatI GCNGC 5 cut(s) 99, 114, 155, 192, 290
Sau3AI GATC 2 cut(s) 232, 394
SetI ASST 6 cut(s) 100, 156, 223, 282, 299, 376
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 200
SphI GCATGC 1 cut(s) 33
Sse9I AATT 2 cut(s) 35, 333
SspMI CTAG 1 cut(s) 218
TaqI TCGA 3 cut(s) 181, 223, 397
TasI AATT 2 cut(s) 35, 333
TatI WGTACW 1 cut(s) 118
TseI GCWGC 5 cut(s) 98, 113, 154, 191, 289
TspDTI ATGAA 2 cut(s) 9, 225
XapI RAATTY 1 cut(s) 35
XceI RCATGY 2 cut(s) 33, 324
XspI CTAG 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.