AT5G06300
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1921548 .. 1925407
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06300.1

Sequence Viewer

Length: 654 bp
ATGGAAGAGACAAAATCGAGATTCAAGAGGATCTGTGTCTTCTGTGGAAGCAGTTCCGGCAAAAAACCTTCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTGGTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGTGGTCGCCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACTGGTGAGACCATCGGAGAAGTTAAAGCCGTGGCCGATATGCATCAAAGGAAAGCTGAAATGGCTCGCCAAGCCGACGCATTCATTGCCCTTCCTGGTGGGTATGGTACGTTAGAAGAATTGCTGGAAGTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGATGGTTACTACAACTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCCCCAATGGCTCGTCGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTCGAGGAATATGAACCGGAGTTTGATGAGATAACATCAAAATTGGTTTGGGATGAAGTGGACCGGATAAGTTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

23.89

Weight (kDa)

5.46

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 15 - 141 5.7e-14 SLOG cluster4 family
Lysine_decarbox PF03641 53 - 183 3.4e-50 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011648)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 645
AclI AACGTT 1 cut(s) 452
AclWI GGATC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 273
AfaI GTAC 2 cut(s) 349, 624
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 2 cut(s) 25, 92
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 5 cut(s) 83, 176, 296, 518, 641
AluI AGCT 5 cut(s) 83, 176, 296, 518, 641
Alw26I GTCTC 5 cut(s) 2, 167, 172, 242, 517
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 607
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 2 cut(s) 31, 407
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 260, 422
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 336
BciVI GTATCC 1 cut(s) 404
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 5 cut(s) 2, 167, 172, 242, 517
BfaI CTAG 1 cut(s) 203
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 336, 627
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 607
BmrFI CCNGG 2 cut(s) 336, 627
BmsI GCATC 2 cut(s) 216, 292
BpiI GAAGAC 2 cut(s) 31, 407
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 651
BsaBI GATNNNNATC 2 cut(s) 282, 484
BsaI GGTCTC 2 cut(s) 167, 242
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 2 cut(s) 562, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 2 cut(s) 282, 484
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 433, 604
BseJI GATNNNNATC 2 cut(s) 282, 484
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 5 cut(s) 57, 407, 563, 610, 626
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 5 cut(s) 2, 167, 172, 242, 517
BsmBI CGTCTC 2 cut(s) 172, 517
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 2 cut(s) 167, 242
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 645
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 527
BspPI GGATC 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 167, 242
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 30
BssNAI GTATAC 1 cut(s) 133
Bst1107I GTATAC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 514
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 433, 604
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 5 cut(s) 2, 167, 172, 242, 517
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 5 cut(s) 57, 302, 311, 326, 524
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 334, 625
BstSNI TACGTA 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 31, 407
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 30
BstZ17I GTATAC 1 cut(s) 133
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 2 cut(s) 433, 604
Cac8I GCNNGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 348, 623
CviAII CATG 3 cut(s) 185, 197, 378
CviQI GTAC 2 cut(s) 348, 623
DdeI CTNAG 1 cut(s) 514
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 273
Eco105I TACGTA 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 2 cut(s) 167, 242
Eco47I GGWCC 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 385
Esp3I CGTCTC 2 cut(s) 172, 517
FaeI CATG 3 cut(s) 188, 200, 381
FatI CATG 3 cut(s) 184, 196, 377
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 440, 611
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 275
HapII CCGG 5 cut(s) 57, 407, 563, 610, 626
HgaI GACGC 1 cut(s) 326
Hin1II CATG 3 cut(s) 188, 200, 381
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 2 cut(s) 21, 504
HpaI GTTAAC 1 cut(s) 450
HpaII CCGG 5 cut(s) 57, 407, 563, 610, 626
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 4 cut(s) 133, 450, 472, 607
Hpy188I TCNGA 2 cut(s) 257, 634
Hpy188III TCNNGA 2 cut(s) 18, 25
Hpy8I GTNNAC 4 cut(s) 133, 450, 472, 607
Hpy99I CGWCG 2 cut(s) 320, 504
HpyAV CCTTC 4 cut(s) 78, 111, 341, 470
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 4 cut(s) 350, 423, 452, 650
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 302, 311, 326, 524
HpyF3I CTNAG 1 cut(s) 514
HpySE526I ACGT 4 cut(s) 350, 423, 452, 650
Hsp92II CATG 3 cut(s) 188, 200, 381
KspAI GTTAAC 1 cut(s) 450
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 9 cut(s) 70, 228, 321, 348, 350, 420, 576, 623, 639
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 216, 292
MaeI CTAG 1 cut(s) 203
MaeII ACGT 4 cut(s) 350, 423, 452, 650
MaeIII GTNAC 2 cut(s) 98, 431
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 17, 31, 368, 407
MfeI CAATTG 1 cut(s) 92
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 3 cut(s) 92, 359, 587
MnlI CCTC 4 cut(s) 21, 131, 544, 628
Mph1103I ATGCAT 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 52
MseI TTAA 3 cut(s) 264, 420, 449
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 5 cut(s) 57, 407, 563, 610, 626
MspR9I CCNGG 2 cut(s) 336, 627
MunI CAATTG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 5 cut(s) 57, 302, 311, 326, 524
NciI CCSGG 1 cut(s) 627
NdeII GATC 1 cut(s) 30
NlaIII CATG 3 cut(s) 188, 200, 381
NsiI ATGCAT 1 cut(s) 285
PaeR7I CTCGAG 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 449
PctI GAATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 21, 504
PkrI GCNGC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 651
Psp1406I AACGTT 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 607
PspXI VCTCGAGB 1 cut(s) 548
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 2 cut(s) 349, 624
RsaNI GTAC 2 cut(s) 348, 623
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 3 cut(s) 264, 420, 449
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 607
ScrFI CCNGG 2 cut(s) 336, 627
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 2 cut(s) 216, 292
Sfr274I CTCGAG 1 cut(s) 548
SinI GGWCC 1 cut(s) 607
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 171, 548
SmoI CTYRAG 2 cut(s) 171, 548
SnaBI TACGTA 1 cut(s) 651
Sse9I AATT 3 cut(s) 92, 359, 587
SsiI CCGC 1 cut(s) 645
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 334, 625
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 4 cut(s) 353, 426, 455, 653
TaqI TCGA 4 cut(s) 17, 502, 541, 549
TasI AATT 3 cut(s) 92, 359, 587
TfiI GAWTC 2 cut(s) 21, 504
Tru1I TTAA 3 cut(s) 264, 420, 449
Tru9I TTAA 3 cut(s) 264, 420, 449
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 5 cut(s) 60, 170, 313, 573, 615
TspGWI ACGGA 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 607
XhoI CTCGAG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 52
XspI CTAG 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.