Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013093

Physical Location & Seq

Genomic Coordinates Reverse (-)

1974535 .. 1975530

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACGTTGAAGCAAAGCTTAACTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGAGACGAAATAGTCGCTGAATCTGGTCAAAGCAAAGGTTGTGTTACACCAACACTACTAGAGCTTGAGGATGCAGAGGAACATAATCTTGAAGAAGAAAGAGGGATTCTTCTGGAGTTTAAAGAGAATTGCCCACCCGGAGGAGAAGATTCGGTTGTATTCTACACGACGGGCCTGCGAAGTGTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTGATGTATAGAGAGAGAGACGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTGCTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCAGAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTACTACAAGGAATCTCACAGGTTGATTCACCTTGCGAGTCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGCAATGGAAGCACAAGATTGCTTGCAGAGCATCACGATGAAGAGAGTAGTAATGATAATATGTGGACAAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

239

Amino Acids

27.36

Weight (kDa)

6.21

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	91 - 157	3e-14	Glutaredoxin
GRXCR1-2_C	PF23733	186 - 238	4.2e-16	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11773 AT3G11773 AT5G06470
fragaria_vesca	FvH4_6g20660
malus_domestica	MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica	Prupe.7G092000_v2.0.a1
pyrus_communis	pycom14g03560
rosa_chinensis	RchiOBHm_Chr3g0476541
rosa_laevigata	RLG00000023763
rosa_multiflora	Rmu_sc0004556.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405240
rosa_rugosa	Rorug03G0154700
rosa_samantha	Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana	Rw3G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	536
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	3 cut(s)	91, 467, 715
AfiI	CCNNNNNNNGG	2 cut(s)	257, 444
AgsI	TTSAA	4 cut(s)	64, 209, 317, 499
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	6 cut(s)	72, 181, 320, 514, 523, 597
AluI	AGCT	6 cut(s)	72, 181, 320, 514, 523, 597
Alw26I	GTCTC	2 cut(s)	114, 369
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	5 cut(s)	37, 37, 344, 370, 543
BaeI	ACNNNNGTAYC	2 cut(s)	457, 490
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	114, 369
BfaI	CTAG	2 cut(s)	176, 594
BisI	GCNGC	1 cut(s)	598
BlsI	GCNGC	1 cut(s)	599
Bme1390I	CCNGG	2 cut(s)	255, 356
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	255, 356
BmsI	GCATC	3 cut(s)	178, 637, 659
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	384, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 444
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	384, 443
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	257, 444
BseMI	GCAATG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	584
BshFI	GGCC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	257, 444
BsmAI	GTCTC	2 cut(s)	114, 369
BsmBI	CGTCTC	2 cut(s)	114, 369
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	384, 443
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	4 cut(s)	84, 322, 399, 633
BstBAI	YACGTR	1 cut(s)	717
BstC8I	GCNNGC	3 cut(s)	293, 322, 621
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	2 cut(s)	114, 369
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	520, 564, 606, 625
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	253, 354
BstSNI	TACGTA	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	291
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	293, 322, 621
Cfr13I	GGNCC	1 cut(s)	289
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	90, 466, 714
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	8 cut(s)	72, 181, 291, 320, 448, 514, 523, 597
CviKI_1	RGCY	8 cut(s)	72, 181, 291, 320, 448, 514, 523, 597
CviQI	GTAC	3 cut(s)	90, 466, 714
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DraI	TTTAAA	1 cut(s)	238
DraIII	CACNNNGTG	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	4 cut(s)	84, 322, 399, 633
EarI	CTCTTC	4 cut(s)	84, 322, 399, 633
Eco105I	TACGTA	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	114, 369
FaeI	CATG	1 cut(s)	388
FaiI	YATR	6 cut(s)	84, 201, 366, 386, 589, 659
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	598
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	598
FspBI	CTAG	2 cut(s)	176, 594
GluI	GCNGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	70, 318
HinfI	GANTC	9 cut(s)	137, 223, 266, 336, 349, 389, 534, 548, 560
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	5 cut(s)	37, 37, 344, 370, 543
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	394, 444
Hpy188III	TCNNGA	4 cut(s)	55, 206, 230, 632
Hpy8I	GTNNAC	1 cut(s)	663
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	59, 378, 716
HpyCH4V	TGCA	5 cut(s)	191, 324, 600, 623, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	520, 564, 606, 625
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	3 cut(s)	59, 378, 716
Hsp92II	CATG	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	7 cut(s)	126, 215, 268, 305, 341, 368, 527
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	3 cut(s)	178, 637, 659
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	2 cut(s)	176, 594
MaeII	ACGT	3 cut(s)	59, 378, 716
MaeIII	GTNAC	2 cut(s)	160, 433
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	2 cut(s)	74, 237
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	255, 356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	4 cut(s)	520, 564, 606, 625
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	388
PfeI	GAWTC	8 cut(s)	137, 223, 266, 336, 349, 389, 534, 548
PkrI	GCNGC	1 cut(s)	599
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Ppu21I	YACGTR	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	289
RsaI	GTAC	3 cut(s)	91, 467, 715
RsaNI	GTAC	3 cut(s)	90, 466, 714
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	74, 237
SatI	GCNGC	1 cut(s)	598
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	255, 356
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	3 cut(s)	178, 637, 659
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SnaBI	TACGTA	1 cut(s)	717
Sse9I	AATT	1 cut(s)	244
SspMI	CTAG	2 cut(s)	176, 594
StyD4I	CCNGG	2 cut(s)	253, 354
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	3 cut(s)	62, 381, 719
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	8 cut(s)	137, 223, 266, 336, 349, 389, 534, 548
Tru1I	TTAA	2 cut(s)	74, 237
Tru9I	TTAA	2 cut(s)	74, 237
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	597
TspDTI	ATGAA	5 cut(s)	17, 26, 71, 442, 651
TspRI	CASTG	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	442
XspI	CTAG	2 cut(s)	176, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.