Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013093

Physical Location & Seq

Genomic Coordinates Forward (+)

20466863 .. 20469998

Gene Structure 3136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGAGGAATGAGGGGAAAATTTCTCAAGACATTGAAGTCCATCCCAACAATTAGTTCTTTCAGACATGGCCTGGTTTTTCAGCTAAGCCCCACAGAAAAGATTTCCATTCGGAAGAATCACAGTTTCTCCGCTGAGCTTGTAGTTAAGGAAGCACTCAAGGATGAAGATAAAGAATTGGGGTTCAATGTTGGCGACAATGAGAGTGTTACCCCACCATTTTTAGATTTTGAGGAAGAAACAGACGAGGACGAAAACCTTCCATCTTTGTTAGATTTCGAAGAGAAATGTCCACCCGGGGGAGGCGACTCTGTCATTCTTTATACAACAAGCTTGACAGGTATCAGAAAAACATTTGAGGACTGCAAGGCAATCCGATTTCTGCTTGAAAGTTTCAAGGTAATGGTGCAAGAGAGGGACGTTTCGATGCACATGGAATTCAGGGAAGAGTTGTGGAAGATGTTTGATAGTAAAGTGATCCCTCCGAGGCTTTTCATCAAGGGGAGGTACATTGGAGGAGCTGATGAAGTAGTAGTGCTTCATGAGCAAGGAAAGCTGAAGAAGCTCTTAGAAGGAATCCCACAAGACCTGTCTGATTCACCATGTAGCGGCTGTGCCAACATGCGGTTTGTTGTGTGCTTCAATTGCAATGGAAGTCGAAAGGTGTTTACAGACAGTGATCATGAAAATGATGAACTGCACGTTAAATGTGCAAAGTGTAACGAAAATGGTCTGATCAGGTGTTCCATCTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

252

Amino Acids

28.56

Weight (kDa)

5.4

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	105 - 171	7.9e-12	Glutaredoxin
GRXCR1-2_C	PF23733	202 - 252	7.4e-17	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11773 AT3G11773 AT5G06470
fragaria_vesca	FvH4_6g20660
malus_domestica	MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica	Prupe.7G092000_v2.0.a1
pyrus_communis	pycom14g03560
rosa_chinensis	RchiOBHm_Chr3g0476541
rosa_laevigata	RLG00000023763
rosa_multiflora	Rmu_sc0004556.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405240
rosa_rugosa	Rorug03G0154700
rosa_samantha	Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana	Rw3G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AciI	CCGC	3 cut(s)	132, 609, 625
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	2 cut(s)	20, 437
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	4 cut(s)	299, 302, 608, 624
AgsI	TTSAA	5 cut(s)	37, 187, 389, 397, 643
AjnI	CCWGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	85, 139, 333, 521, 556, 565
AluI	AGCT	6 cut(s)	85, 139, 333, 521, 556, 565
AlwI	GGATC	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	753
ApoI	RAATTY	2 cut(s)	20, 437
Asp700I	GAANNNNTTC	1 cut(s)	258
AsuC2I	CCSGG	2 cut(s)	297, 298
AsuHPI	GGTGA	1 cut(s)	591
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	3 cut(s)	50, 271, 755
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	2 cut(s)	679, 735
BcnI	CCSGG	2 cut(s)	297, 298
BisI	GCNGC	2 cut(s)	610, 754
BlpI	GCTNAGC	2 cut(s)	86, 135
BlsI	GCNGC	2 cut(s)	611, 755
Bme1390I	CCNGG	3 cut(s)	74, 297, 298
BmeT110I	CYCGRG	1 cut(s)	296
BmrFI	CCNGG	3 cut(s)	74, 297, 298
BmsI	GCATC	1 cut(s)	417
Bpu1102I	GCTNAGC	2 cut(s)	86, 135
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	11, 143
BpuMI	CCSGG	2 cut(s)	297, 298
BsaJI	CCNNGG	3 cut(s)	296, 297, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	4 cut(s)	299, 302, 608, 624
Bse3DI	GCAATG	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	296, 297, 485
BseGI	GGATG	2 cut(s)	42, 169
BseLI	CCNNNNNNNGG	4 cut(s)	299, 302, 608, 624
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	4 cut(s)	299, 302, 608, 624
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	477, 679, 735
Bsp1720I	GCTNAGC	2 cut(s)	86, 135
BspACI	CCGC	3 cut(s)	132, 609, 625
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	2 cut(s)	541, 682
BspPI	GGATC	1 cut(s)	472
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	296, 297, 485
BssMI	GATC	3 cut(s)	477, 679, 735
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	125, 677
Bst6I	CTCTTC	2 cut(s)	276, 441
BstBI	TTCGAA	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	86, 135, 568
BstF5I	GGATG	2 cut(s)	42, 169
BstKTI	GATC	3 cut(s)	480, 682, 738
BstMBI	GATC	3 cut(s)	477, 679, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	544, 553, 562, 645
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	3 cut(s)	72, 295, 296
BstV1I	GCAGC	1 cut(s)	740
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	42, 169
BtsIMutI	CAGTG	1 cut(s)	682
CciI	TCATGA	2 cut(s)	541, 682
Cfr9I	CCCGGG	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	6 cut(s)	68, 433, 542, 603, 622, 683
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	86, 135, 568
DpnI	GATC	3 cut(s)	479, 681, 737
DpnII	GATC	3 cut(s)	477, 679, 735
DrdI	GACNNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	276, 441
EarI	CTCTTC	2 cut(s)	276, 441
Eco57I	CTGAAG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	6 cut(s)	71, 436, 545, 606, 625, 686
FaiI	YATR	7 cut(s)	69, 324, 434, 543, 604, 623, 684
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	6 cut(s)	67, 432, 541, 602, 621, 682
FbaI	TGATCA	2 cut(s)	679, 735
Fnu4HI	GCNGC	2 cut(s)	610, 754
FokI	GGATG	2 cut(s)	29, 176
Fsp4HI	GCNGC	2 cut(s)	610, 754
GluI	GCNGC	2 cut(s)	610, 754
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	6 cut(s)	71, 436, 545, 606, 625, 686
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	4 cut(s)	118, 308, 576, 596
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	591
Hpy166II	GTNNAC	2 cut(s)	293, 669
Hpy188I	TCNGA	7 cut(s)	65, 114, 347, 377, 486, 595, 735
Hpy188III	TCNNGA	3 cut(s)	28, 542, 683
Hpy8I	GTNNAC	2 cut(s)	293, 669
HpyAV	CCTTC	2 cut(s)	269, 566
HpyCH4III	ACNGT	2 cut(s)	125, 677
HpyCH4IV	ACGT	2 cut(s)	420, 702
HpyCH4V	TGCA	6 cut(s)	366, 409, 430, 648, 700, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	544, 553, 562, 645
HpyF3I	CTNAG	3 cut(s)	86, 135, 568
HpySE526I	ACGT	2 cut(s)	420, 702
Hsp92II	CATG	6 cut(s)	71, 436, 545, 606, 625, 686
Ksp22I	TGATCA	2 cut(s)	679, 735
Kzo9I	GATC	3 cut(s)	477, 679, 735
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	7 cut(s)	59, 86, 310, 324, 427, 602, 724
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	1 cut(s)	417
MaeII	ACGT	2 cut(s)	420, 702
MaeIII	GTNAC	2 cut(s)	208, 719
MalI	GATC	3 cut(s)	479, 681, 737
MboI	GATC	3 cut(s)	477, 679, 735
MboII	GAAGA	7 cut(s)	127, 179, 248, 293, 458, 469, 571
MfeI	CAATTG	1 cut(s)	643
MluCI	AATT	5 cut(s)	20, 51, 176, 437, 643
MlyI	GAGTC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	147, 705
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	74, 297, 298
MunI	CAATTG	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	544, 553, 562, 645
NciI	CCSGG	2 cut(s)	297, 298
NdeII	GATC	3 cut(s)	477, 679, 735
NlaIII	CATG	6 cut(s)	71, 436, 545, 606, 625, 686
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	279
PagI	TCATGA	2 cut(s)	541, 682
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	118, 576, 596
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	611, 755
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	147, 705
SatI	GCNGC	2 cut(s)	610, 754
Sau3AI	GATC	3 cut(s)	477, 679, 735
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	74, 297, 298
SfaNI	GCATC	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	279
SmaI	CCCGGG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	2 cut(s)	26, 158
SmoI	CTYRAG	2 cut(s)	26, 158
Sse9I	AATT	5 cut(s)	20, 51, 176, 437, 643
SsiI	CCGC	3 cut(s)	132, 609, 625
StyD4I	CCNGG	3 cut(s)	72, 295, 296
TaaI	ACNGT	2 cut(s)	125, 677
TaiI	ACGT	2 cut(s)	423, 705
TaqI	TCGA	3 cut(s)	279, 425, 658
TasI	AATT	5 cut(s)	20, 51, 176, 437, 643
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	3 cut(s)	118, 576, 596
Tru1I	TTAA	2 cut(s)	147, 705
Tru9I	TTAA	2 cut(s)	147, 705
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	1 cut(s)	753
TspDTI	ATGAA	6 cut(s)	180, 484, 530, 540, 699, 708
TspMI	CCCGGG	1 cut(s)	296
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	20, 437
XceI	RCATGY	1 cut(s)	625
XmaI	CCCGGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.