Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009073

Physical Location & Seq

Genomic Coordinates Forward (+)

12757973 .. 12764254

Gene Structure 6282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0154700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGAAGGTCCGGCCAGTCCAGGCGGCGGCGGGAGCCACGACAGCGGCGGCGAGCACAGTCCGCGGTCGAATGTTCGAGAACAGGATCGGTATCTTCCGATCGCGAATATTAGCAGGATCATGAAGAAGGCGCTTCCGGCGAACGGTAAGATCGCCAAGGATGCGAAGGAGACTGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTCATCACCAGCGAGGCGAGTGATAAGTGCCAGAGGGAAAAGAGGAAGACGATTAATGGTGACGATTTGCTTTGGGCTATGGCGACTTTAGGGTTTGAAGACTATATCGATCCTCTCAAGGTTTACCTTGCAAAATACAGAGAGATGGAGGGTGATACTAAGGGTTCAGGAAAGGGTGGAGAGTCATCTTCTAAGAAAGAAGTTCAGCCAAGCTCAATTGCTCAGATTTCTCATCAAGGTTCTTTCTCTCAAGGAGCTAGTTACTCAAATTCTCAAACCCAACAAATGATGGTTCCTATGCAAGGCTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1_DerP2_DerF2

Protein Analysis

173

Amino Acids

18.71

Weight (kDa)

5.97

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	19 - 96	2e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	32 - 96	7.1e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11780 AT3G11780 AT5G06480
fragaria_vesca	FvH4_6g20650
malus_domestica	MD12G1042800.v1.1 MD14G1041700.v1.1
prunus_persica	Prupe.7G092100_v2.0.a1
pyrus_communis	pycom12g03700 pycom14g03550
rosa_chinensis	RchiOBHm_Chr3g0476531
rosa_laevigata	RLG00000023764
rosa_multiflora	Rmu_co8102346.1_g000001 Rmu_sc0004556.1_g000003
rosa_roxburghii	Rroxscaffold_6G00405250
rosa_rugosa	Rorug03G0154700 Rorug03G0154700 Rorug03G0154700
rosa_samantha	Rh3AG205700 Rh3BG238100 Rh3CG231900 Rh3DG231800
rosa_wichuraiana	Rw3G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	67, 107
AciI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
AclWI	GGATC	3 cut(s)	96, 128, 311
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	29, 146, 509
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	207, 420, 464
AluI	AGCT	3 cut(s)	207, 420, 464
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	96, 128, 311
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	475
AseI	ATTAAT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	205, 278, 371
AvaII	GGWCC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	260, 312
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	346, 490
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	4 cut(s)	28, 31, 49, 52
BlsI	GCNGC	4 cut(s)	29, 32, 50, 53
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	38, 501
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	260, 312
BpuEI	CTTGAG	2 cut(s)	308, 441
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	65, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 146, 509
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	65, 159
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	29, 146, 509
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	67, 107
Bsh1285I	CGRYCG	2 cut(s)	71, 105
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	2 cut(s)	71, 105
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	14, 140
BslI	CCNNNNNNNGG	3 cut(s)	29, 146, 509
BsmAI	GTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	88, 102, 120, 153, 316
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	442
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	2 cut(s)	67, 107
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	38, 501
BspPI	GGATC	3 cut(s)	96, 128, 311
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	65, 159
BssMI	GATC	5 cut(s)	88, 102, 120, 153, 316
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	62, 149, 178
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	366, 399, 429, 514
BstDSI	CCRYGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	67, 107
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	5 cut(s)	91, 105, 123, 156, 319
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	5 cut(s)	88, 102, 120, 153, 316
BstMCI	CGRYCG	2 cut(s)	71, 105
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 45, 64, 140, 164
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstUI	CGCG	2 cut(s)	67, 107
BstV2I	GAAGAC	2 cut(s)	260, 312
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	169
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	56
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	315
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	8 cut(s)	17, 39, 207, 284, 415, 420, 464, 513
CviKI_1	RGCY	8 cut(s)	17, 39, 207, 284, 415, 420, 464, 513
DdeI	CTNAG	4 cut(s)	366, 399, 429, 514
DpnI	GATC	5 cut(s)	90, 104, 122, 155, 318
DpnII	GATC	5 cut(s)	88, 102, 120, 153, 316
EaeI	YGGCCR	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	127
FaiI	YATR	4 cut(s)	125, 287, 312, 506
FatI	CATG	1 cut(s)	123
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	28, 31, 49, 52
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	28, 31, 49, 52
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	4 cut(s)	28, 31, 49, 52
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	14, 140
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	14, 140
HphI	GGTGA	3 cut(s)	205, 278, 371
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	4 cut(s)	102, 196, 432, 517
Hpy188III	TCNNGA	4 cut(s)	80, 106, 124, 375
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	124, 163
HpyCH4III	ACNGT	3 cut(s)	62, 149, 178
HpyCH4V	TGCA	3 cut(s)	181, 338, 508
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 45, 64, 140, 164
HpyF3I	CTNAG	4 cut(s)	366, 399, 429, 514
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	1 cut(s)	134
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	5 cut(s)	88, 102, 120, 153, 316
LmnI	GCTCC	2 cut(s)	36, 461
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	266, 467
MalI	GATC	5 cut(s)	90, 104, 122, 155, 318
MboI	GATC	5 cut(s)	88, 102, 120, 153, 316
MboII	GAAGA	5 cut(s)	89, 139, 265, 317, 387
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	423, 475
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	5 cut(s)	214, 234, 243, 330, 349
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	48, 67
MspI	CCGG	2 cut(s)	14, 140
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	67, 107
MwoI	GCNNNNNNNGC	5 cut(s)	36, 45, 64, 140, 164
NdeII	GATC	5 cut(s)	88, 102, 120, 153, 316
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	38, 501
NmuCI	GTSAC	1 cut(s)	266
NruI	TCGCGA	1 cut(s)	107
PagI	TCATGA	1 cut(s)	123
PctI	GAATGC	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	29, 32, 50, 53
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	38, 501
PspPI	GGNCC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	105
RruI	TCGCGA	1 cut(s)	107
SacII	CCGCGG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	28, 31, 49, 52
Sau3AI	GATC	5 cut(s)	88, 102, 120, 153, 316
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	7 cut(s)	13, 209, 330, 336, 422, 448, 466
SfaNI	GCATC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	323, 456
SmoI	CTYRAG	2 cut(s)	323, 456
Sse9I	AATT	2 cut(s)	423, 475
SsiI	CCGC	8 cut(s)	5, 27, 30, 33, 48, 51, 65, 67
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	62, 149, 178
TaqI	TCGA	3 cut(s)	71, 79, 315
TasI	AATT	2 cut(s)	423, 475
TauI	GCSGC	4 cut(s)	30, 33, 51, 54
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	140, 190, 199
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	1 cut(s)	475
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.