AT3G11780
ERF Family

MD-2-related lipid recognition domain-containing protein ML domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009073
Physical Location & Seq
Reverse (-)
3723894 .. 3725618
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11780.1

Sequence Viewer

Length: 462 bp
ATGTCTAAGTTCACGGGATTCTCATCTCTCGCTATCTCTTATTTTCTCTTGGTTTCAACGATTGTTGCAGCCACCGATGTTCACTACTGCGATAATAACGAAGAGTATGAAGTAAAAGTACAAGGAGTTGATATAACTCCTTATCCTATAGCTAGAGGCGAGCCAGCTACTTTCAGAATTTCTGCTAACACAGACACTGAGATCTCGAGCGGCAAGTTGGTGATCGAAGTTTCCTACTTTGGATGGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCCATTGGAGATTTCTTGGTAGCGCACTCGCAAGTTCTTCCCGGATATACCCCTCCTGGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATCAAGTTCTCATTTGATATTGGATTTGGATCCTCCGTGGCCGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

153

Amino Acids

16.8

Weight (kDa)

4.93

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 25 - 143 1.8e-25 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AciI CCGC 1 cut(s) 210
AclWI GGATC 2 cut(s) 435, 448
AcoI YGGCCR 2 cut(s) 297, 450
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 1 cut(s) 57
AhdI GACNNNNNGTC 1 cut(s) 288
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 152, 167
AluI AGCT 2 cut(s) 152, 167
Alw26I GTCTC 2 cut(s) 254, 275
AlwI GGATC 2 cut(s) 435, 448
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 297, 450
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 205
BalI TGGCCA 1 cut(s) 299
BamHI GGATCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 102, 134
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 237, 380
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 2 cut(s) 254, 275
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 201
BisI GCNGC 2 cut(s) 69, 211
BlsI GCNGC 2 cut(s) 70, 212
Bme1390I CCNGG 2 cut(s) 339, 354
BmeRI GACNNNNNGTC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 2 cut(s) 339, 354
BmsI GCATC 2 cut(s) 369, 420
BpuMI CCSGG 1 cut(s) 339
BsaBI GATNNNNATC 2 cut(s) 22, 439
BsaJI CCNNGG 1 cut(s) 447
Bse8I GATNNNNATC 2 cut(s) 22, 439
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 248
BseJI GATNNNNATC 2 cut(s) 22, 439
BseMII CTCAG 2 cut(s) 189, 249
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 299, 452
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 254, 275
BsnI GGCC 2 cut(s) 299, 452
BsoBI CYCGRG 1 cut(s) 205
Bsp143I GATC 4 cut(s) 201, 222, 268, 440
BspACI CCGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 299, 452
BspCNI CTCAG 2 cut(s) 190, 250
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 2 cut(s) 435, 448
BsrBI CCGCTC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 201, 222, 268, 440
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 161, 165
BstDEI CTNAG 3 cut(s) 6, 198, 258
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 204, 225, 271, 443
BstMAI GTCTC 2 cut(s) 254, 275
BstMBI GATC 4 cut(s) 201, 222, 268, 440
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 337, 352
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 201, 440
BstYI RGATCY 2 cut(s) 201, 440
BsuRI GGCC 2 cut(s) 299, 452
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 161, 165
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 322
CseI GACGC 1 cut(s) 399
Csp6I GTAC 1 cut(s) 119
CviAII CATG 2 cut(s) 266, 457
CviJI RGCY 6 cut(s) 71, 152, 163, 167, 299, 452
CviKI_1 RGCY 6 cut(s) 71, 152, 163, 167, 299, 452
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 3 cut(s) 6, 198, 258
DpnI GATC 4 cut(s) 203, 224, 270, 442
DpnII GATC 4 cut(s) 201, 222, 268, 440
DriI GACNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 2 cut(s) 297, 450
Eam1104I CTCTTC 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 269, 460
FaiI YATR 8 cut(s) 108, 134, 149, 249, 267, 345, 361, 458
FatI CATG 2 cut(s) 265, 456
Fnu4HI GCNGC 2 cut(s) 69, 211
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 69, 211
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 69, 211
HaeIII GGCC 2 cut(s) 299, 452
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 269, 460
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 1 cut(s) 18
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 3 cut(s) 12, 82, 405
Hpy188I TCNGA 2 cut(s) 176, 259
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 3 cut(s) 12, 82, 405
HpyAV CCTTC 1 cut(s) 391
HpyCH4V TGCA 2 cut(s) 68, 411
HpyF3I CTNAG 3 cut(s) 6, 198, 258
Hsp92II CATG 2 cut(s) 269, 460
HspAI GCGC 1 cut(s) 320
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 4 cut(s) 201, 222, 268, 440
LpnPI CCDG 5 cut(s) 177, 306, 339, 352, 366
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 2 cut(s) 369, 420
MaeI CTAG 1 cut(s) 153
MalI GATC 4 cut(s) 203, 224, 270, 442
MbiI CCGCTC 1 cut(s) 210
MboI GATC 4 cut(s) 201, 222, 268, 440
MboII GAAGA 3 cut(s) 113, 326, 388
MflI RGATCY 2 cut(s) 201, 440
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 1 cut(s) 177
MluNI TGGCCA 1 cut(s) 299
MnlI CCTC 3 cut(s) 149, 360, 454
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 339, 354
MvaI CCWGG 1 cut(s) 354
NciI CCSGG 1 cut(s) 339
NdeII GATC 4 cut(s) 201, 222, 268, 440
NlaIII CATG 2 cut(s) 269, 460
NlaIV GGNNCC 1 cut(s) 442
NspI RCATGY 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 205
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 1 cut(s) 18
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 2 cut(s) 70, 212
PscI ACATGT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 201, 440
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 2 cut(s) 69, 211
Sau3AI GATC 4 cut(s) 201, 222, 268, 440
ScrFI CCNGG 2 cut(s) 339, 354
SetI ASST 2 cut(s) 154, 169
SfaNI GCATC 2 cut(s) 369, 420
SfcI CTRYAG 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 337, 352
TaqI TCGA 2 cut(s) 206, 225
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 118
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 4 cut(s) 123, 242, 348, 389
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 202
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 205
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.