Rroxscaffold_6G00405250
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
27650735 .. 27653971
3237 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00405250.1

Sequence Viewer

Length: 351 bp
ATGGCTCCGTTGAAACTCATCGCCGCCCTCCTTGTCTCCTTCTGCGTTCTTCTACCTCTCACTCATGCCGTCAGCAAGGACGTTAGCTACTGCGATAAGAATGCTGATTATGCTGTCAAGGTCACGGGACTCGACATAAACCCTTACCCTATCGCCAGAGGCAAGCCTGCCAGCTTCAACATTGCTGCAACTACAGATGGTTCAAAATGGACTTTTAGCATAAACAGGAAGGAGGCGGTGATGGGTTCATACTCTCTTAAGATGAAGATGTATGATGGAAACAAGCAAGAGCTGACATGCATTGCCTTCGATTTTGACATTGGGTTTGTAGCTCCTGTGGCCGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

7.66

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 236
AcoI YGGCCR 1 cut(s) 339
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 13, 178, 204
AluBI AGCT 4 cut(s) 87, 174, 292, 332
AluI AGCT 4 cut(s) 87, 174, 292, 332
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AsuHPI GGTGA 1 cut(s) 250
BbvI GCAGC 1 cut(s) 172
BccI CCATC 3 cut(s) 191, 235, 269
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 289, 323
BcoDI GTCTC 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 24, 186
BlsI GCNGC 2 cut(s) 25, 187
BmiI GGNNCC 1 cut(s) 6
Bse3DI GCAATG 2 cut(s) 180, 300
BseMI GCAATG 2 cut(s) 180, 300
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 341
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 341
BspACI CCGC 2 cut(s) 24, 236
BspANI GGCC 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 180, 300
BstAFI CTTAAG 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 164, 168, 172
BstMAI GTCTC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 110, 338
BstNSI RCATGY 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 341
BtgZI GCGATG 1 cut(s) 4
Cac8I GCNNGC 3 cut(s) 164, 168, 172
CviAII CATG 2 cut(s) 65, 297
CviJI RGCY 7 cut(s) 5, 87, 166, 174, 292, 332, 341
CviKI_1 RGCY 7 cut(s) 5, 87, 166, 174, 292, 332, 341
EaeI YGGCCR 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 302
FaeI CATG 2 cut(s) 68, 300
FaiI YATR 7 cut(s) 66, 111, 137, 221, 250, 273, 298
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 64, 296
Fnu4HI GCNGC 2 cut(s) 24, 186
Fsp4HI GCNGC 2 cut(s) 24, 186
GluI GCNGC 2 cut(s) 24, 186
HaeIII GGCC 1 cut(s) 341
Hin1II CATG 2 cut(s) 68, 300
HinfI GANTC 1 cut(s) 129
HphI GGTGA 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 49, 223, 316
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 188, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 338
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 68, 300
LmnI GCTCC 2 cut(s) 10, 337
LpnPI CCDG 4 cut(s) 169, 180, 184, 211
Lsp1109I GCAGC 1 cut(s) 172
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 2 cut(s) 41, 277
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 4 cut(s) 38, 66, 152, 226
Mph1103I ATGCAT 1 cut(s) 302
MseI TTAA 2 cut(s) 258, 349
MspCI CTTAAG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 110, 338
NlaIII CATG 2 cut(s) 68, 300
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 302
NspI RCATGY 1 cut(s) 300
PctI GAATGC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 25, 187
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 258, 349
SatI GCNGC 2 cut(s) 24, 186
SchI GAGTC 1 cut(s) 123
SetI ASST 7 cut(s) 58, 84, 89, 123, 176, 294, 334
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SsiI CCGC 2 cut(s) 24, 236
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 132, 309
TauI GCSGC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 258, 349
Tru9I TTAA 2 cut(s) 258, 349
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 2 cut(s) 237, 278
Vha464I CTTAAG 1 cut(s) 257
XceI RCATGY 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.