RLG00000023764
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009073
Physical Location & Seq
Reverse (-)
27987795 .. 27990626
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023764

Sequence Viewer

Length: 465 bp
ATGGCTCCGTTGAAACTCATCGCCGCCCTCCTTGTCTCCTTCTGCGTTCTTCTACCTCTCACTCATGCCGTTAGCAAGGACGTCAGCTACTGCGATAAGAATGCTGACTATGCTGTCAAGGTCACGGGACTCGACATAAGCCCTTACCCTATCGCCAGAGGCAAGCCGGCCAGCTTCAACATTGCTGCGACTACAGGTGAATCAATCACCGGAGGGAAATTGGTGATTGATGTTTCGTACTTTGGGTGGCACATCCACAGTGAGAGTCATGACCTTTGCTCGGAAACATCTTGCCCTGTTTCAATTGGTGATTTCGTGGTTGCCCACTCACAAGAATTACCTGGATATACTCCACCGGGTTCGTACTCTCTTAAGATGAAGATGTATGATGGAAACAAGCAAGAGCTGACATGCATTGCCTTCGATTTTGACATTGGGTTTGTAGCTCCTCTGGCCGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

155

Amino Acids

16.49

Weight (kDa)

5.15

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 27 - 145 1.5e-26 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AatII GACGTC 1 cut(s) 84
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 2 cut(s) 168, 453
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 239, 365
AfiI CCNNNNNNNGG 1 cut(s) 280
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 13, 178, 303
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 87, 174, 406, 446
AluI AGCT 4 cut(s) 87, 174, 406, 446
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 90
AoxI GGCC 2 cut(s) 168, 453
ApeKI GCWGC 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 4 cut(s) 199, 209, 235, 320
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 403, 437
BciT130I CCWGG 1 cut(s) 342
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 2 cut(s) 24, 186
BlsI GCNGC 2 cut(s) 25, 187
Bme1390I CCNGG 2 cut(s) 342, 357
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 342, 357
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 180, 414
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 2 cut(s) 180, 414
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 170, 455
BsiSI CCGG 3 cut(s) 167, 210, 356
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 2 cut(s) 170, 455
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 170, 455
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 180, 414
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 3 cut(s) 164, 168, 172
BstF5I GGATG 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 110, 452
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 340, 355
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 170, 455
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 164, 168, 172
CaiI CAGNNNCTG 1 cut(s) 90
CciI TCATGA 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 166
Csp6I GTAC 2 cut(s) 238, 364
CviAII CATG 3 cut(s) 65, 269, 411
CviJI RGCY 9 cut(s) 5, 87, 141, 166, 170, 174, 406, 446, 455
CviKI_1 RGCY 9 cut(s) 5, 87, 141, 166, 170, 174, 406, 446, 455
CviQI GTAC 2 cut(s) 238, 364
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 2 cut(s) 168, 453
EcoRII CCWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 416
FaeI CATG 3 cut(s) 68, 272, 414
FaiI YATR 7 cut(s) 66, 111, 137, 270, 348, 387, 412
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 64, 268, 410
Fnu4HI GCNGC 2 cut(s) 24, 186
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 24, 186
GluI GCNGC 2 cut(s) 24, 186
HaeIII GGCC 2 cut(s) 170, 455
HapII CCGG 3 cut(s) 167, 210, 356
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 68, 272, 414
HinfI GANTC 3 cut(s) 129, 200, 265
HpaII CCGG 3 cut(s) 167, 210, 356
HphI GGTGA 4 cut(s) 199, 209, 235, 320
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 49, 430
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 452
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 68, 272, 414
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
LmnI GCTCC 2 cut(s) 10, 451
Lsp1109I GCAGC 1 cut(s) 172
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 2 cut(s) 41, 391
MfeI CAATTG 1 cut(s) 303
MluCI AATT 3 cut(s) 218, 303, 335
MlyI GAGTC 2 cut(s) 123, 274
MnlI CCTC 5 cut(s) 38, 66, 152, 206, 459
Mph1103I ATGCAT 1 cut(s) 416
MroNI GCCGGC 1 cut(s) 166
MseI TTAA 2 cut(s) 372, 463
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 3 cut(s) 167, 210, 356
MspR9I CCNGG 2 cut(s) 342, 357
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 110, 452
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 357
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 3 cut(s) 68, 272, 414
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 1 cut(s) 414
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 106
PdiI GCCGGC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 25, 187
PleI GAGTC 2 cut(s) 123, 273
PpsI GAGTC 2 cut(s) 123, 273
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 90
RsaI GTAC 2 cut(s) 239, 365
RsaNI GTAC 2 cut(s) 238, 364
SaqAI TTAA 2 cut(s) 372, 463
SatI GCNGC 2 cut(s) 24, 186
SchI GAGTC 2 cut(s) 123, 274
ScrFI CCNGG 2 cut(s) 342, 357
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 218, 303, 335
SsiI CCGC 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 340, 355
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 132, 423
TasI AATT 3 cut(s) 218, 303, 335
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 372, 463
Tru9I TTAA 2 cut(s) 372, 463
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 371
XceI RCATGY 1 cut(s) 414
ZraI GACGTC 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.