Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004556.1

Orthogroup ID

OG0009073

Physical Location & Seq

Genomic Coordinates Reverse (-)

16641 .. 19454

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004556.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggctccgttgaaactcatcgccgccctccttgtctccttctgcgttcttctacctctcactcatgccgtcagcaaggacgttagctactgcgataagaatgctgactatgctgtcaaggttacgggactcgacataaacccttaccccatcgccagaggcaagcctgccagcttcaacattgctgcaactacaggtgaatcaatcaccggagggaaattggtgattgatgtttcctactttgggtggcacatccacagtgagaatcatgacctttgctcggaaacatcttgccctgtttcagttggtgatttcgtggtcgcccactcacaagaattacctggatatactccacctggttcatactctcttaagatgaagatgtatgatggaaacaagcaagagctgacatgcattgcctttgattttgacattgggtttgcagcttctgtggccgatagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1_DerP2_DerF2

Protein Analysis

154

Amino Acids

16.48

Weight (kDa)

5.15

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11780 AT3G11780 AT5G06480
fragaria_vesca	FvH4_6g20650
malus_domestica	MD12G1042800.v1.1 MD14G1041700.v1.1
prunus_persica	Prupe.7G092100_v2.0.a1
pyrus_communis	pycom12g03700 pycom14g03550
rosa_chinensis	RchiOBHm_Chr3g0476531
rosa_laevigata	RLG00000023764
rosa_multiflora	Rmu_co8102346.1_g000001 Rmu_sc0004556.1_g000003
rosa_roxburghii	Rroxscaffold_6G00405250
rosa_rugosa	Rorug03G0154700 Rorug03G0154700 Rorug03G0154700
rosa_samantha	Rh3AG205700 Rh3BG238100 Rh3CG231900 Rh3DG231800
rosa_wichuraiana	Rw3G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	243, 280
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	13, 178
AjnI	CCWGG	2 cut(s)	340, 355
AluBI	AGCT	4 cut(s)	87, 174, 406, 446
AluI	AGCT	4 cut(s)	87, 174, 406, 446
Alw26I	GTCTC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	185, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AsuHPI	GGTGA	4 cut(s)	199, 209, 235, 320
BbvI	GCAGC	2 cut(s)	172, 455
BccI	CCATC	2 cut(s)	158, 383
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	2 cut(s)	342, 357
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	3 cut(s)	24, 186, 444
BlsI	GCNGC	3 cut(s)	25, 187, 445
Bme1390I	CCNGG	2 cut(s)	342, 357
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	342, 357
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 280
Bse3DI	GCAATG	2 cut(s)	180, 414
BseBI	CCWGG	2 cut(s)	342, 357
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	243, 280
BseMI	GCAATG	2 cut(s)	180, 414
BseXI	GCAGC	2 cut(s)	172, 455
BshFI	GGCC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	243, 280
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	455
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	455
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	180, 414
Bst2UI	CCWGG	2 cut(s)	342, 357
Bst4CI	ACNGT	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	164, 168, 172
BstF5I	GGATG	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 452
BstNI	CCWGG	2 cut(s)	342, 357
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	340, 355
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	172, 455
BsuRI	GGCC	1 cut(s)	455
BtgZI	GCGATG	2 cut(s)	4, 136
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	164, 168, 172
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	268
CsiI	ACCWGGT	1 cut(s)	355
CviAII	CATG	3 cut(s)	65, 269, 411
CviJI	RGCY	7 cut(s)	5, 87, 166, 174, 406, 446, 455
CviKI_1	RGCY	7 cut(s)	5, 87, 166, 174, 406, 446, 455
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	340, 355
EcoT22I	ATGCAT	1 cut(s)	416
FaeI	CATG	3 cut(s)	68, 272, 414
FaiI	YATR	8 cut(s)	66, 111, 137, 270, 348, 364, 387, 412
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	64, 268, 410
Fnu4HI	GCNGC	3 cut(s)	24, 186, 444
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	24, 186, 444
GluI	GCNGC	3 cut(s)	24, 186, 444
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	68, 272, 414
HinfI	GANTC	3 cut(s)	129, 200, 265
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	4 cut(s)	199, 209, 235, 320
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	188, 414, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 452
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	68, 272, 414
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	172, 455
MabI	ACCWGGT	1 cut(s)	355
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	41, 391
MluCI	AATT	2 cut(s)	218, 335
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	38, 66, 152, 206
Mph1103I	ATGCAT	1 cut(s)	416
MseI	TTAA	2 cut(s)	372, 463
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	342, 357
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	342, 357
MwoI	GCNNNNNNNGC	2 cut(s)	110, 452
NlaIII	CATG	3 cut(s)	68, 272, 414
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	200, 265
PkrI	GCNGC	3 cut(s)	25, 187, 445
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	340, 355
PspGI	CCWGG	2 cut(s)	340, 355
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	372, 463
SatI	GCNGC	3 cut(s)	24, 186, 444
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	342, 357
SexAI	ACCWGGT	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	218, 335
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	340, 355
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	218, 335
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	200, 265
Tru1I	TTAA	2 cut(s)	372, 463
Tru9I	TTAA	2 cut(s)	372, 463
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	185, 443
TspDTI	ATGAA	2 cut(s)	351, 392
TspRI	CASTG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	371
XceI	RCATGY	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.