Rh3CG231900
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009073
Physical Location & Seq
Forward (+)
21899705 .. 21903854
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG231900.1

Sequence Viewer

Length: 369 bp
ATGGCTCCGTTGAAACTCATCGCCGCCCTCCTTGTCTCCTTCTGCGTTCTTCTACCTCTCACTCATGCCGTCAGCAAGGACGTTAGCTACTGCGATAAGAATGCTGACTATGCTGTCAAGGTTACGGGACTCGACATAAACCCTTACCCCATCGCCAGAGGCAAGCCTGCCAGCTTCAACATTGCTGCAACTACAGGTGAATCAATCACCGGAGGGAAATTGGTGATTGATGTTTCCTACTTTGGGTGGCACATCCACAGTGAGAATCATGACCTTTGCTCGGAAACATCTTGCCCTGTTTCAGTTGGTGATTTCGTGGTCGCCCACTCACAAGAATTACCTGGATATACTCCACCTGTAAGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

122

Amino Acids

12.96

Weight (kDa)

5.59

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 27 - 121 7e-17 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AciI CCGC 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 243, 280
AgsI TTSAA 2 cut(s) 13, 178
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 2 cut(s) 87, 174
AluI AGCT 2 cut(s) 87, 174
Alw26I GTCTC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 199, 209, 235, 320
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 24, 186
BlsI GCNGC 2 cut(s) 25, 187
Bme1390I CCNGG 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 280
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 243, 280
BseMI GCAATG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 243, 280
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 106
BspACI CCGC 1 cut(s) 24
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 164, 168, 172
BstF5I GGATG 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 172
BtgZI GCGATG 2 cut(s) 4, 136
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 164, 168, 172
CciI TCATGA 1 cut(s) 268
CviAII CATG 2 cut(s) 65, 269
CviJI RGCY 4 cut(s) 5, 87, 166, 174
CviKI_1 RGCY 4 cut(s) 5, 87, 166, 174
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 340
FaeI CATG 2 cut(s) 68, 272
FaiI YATR 5 cut(s) 66, 111, 137, 270, 348
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 64, 268
Fnu4HI GCNGC 2 cut(s) 24, 186
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 24, 186
GluI GCNGC 2 cut(s) 24, 186
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 68, 272
HinfI GANTC 3 cut(s) 129, 200, 265
HpaII CCGG 1 cut(s) 210
HphI GGTGA 4 cut(s) 199, 209, 235, 320
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 68, 272
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 169, 180, 180, 184, 223, 309, 327, 354
Lsp1109I GCAGC 1 cut(s) 172
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 1 cut(s) 41
MluCI AATT 2 cut(s) 218, 335
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 4 cut(s) 38, 66, 152, 206
MseI TTAA 1 cut(s) 367
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 68, 272
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 200, 265
PkrI GCNGC 2 cut(s) 25, 187
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 2 cut(s) 24, 186
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 342
SetI ASST 9 cut(s) 58, 84, 89, 123, 176, 199, 276, 343, 358
SfcI CTRYAG 1 cut(s) 192
Sse9I AATT 2 cut(s) 218, 335
SsiI CCGC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 218, 335
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 200, 265
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 185
TspRI CASTG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.