FvH4_6g20650
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009073
Physical Location & Seq
Forward (+)
14231946 .. 14235699
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20650.t1

Sequence Viewer

Length: 465 bp
ATGGCTCAGTTGAAACTCATCACCGCCCTCCTCGTCTCCTTCTGCGTTCTTCTACCGTTGACTCACGCCGTTAGCAAGGACGTTAGCTACTGCGATAAGAATGCTGACTATGCTGTCAAGGTAACCGGGCTTGACATCAATCCTTACCCTATCGCCCGGGGCAAGCCTGCCAGCTTCAACATTGCTGCGACTACAGGTGAATCAATCACCGGAGGGAAATTGGTGATTGACGTGTCATACTTTGGGTGGCACATCCACAGTGAGAACCATGACCTTTGCTCGGAAACATCTTGCCCTGTTTCAGTTGGTGATTTCGTGGTTGCCCACTCACAAGAATTACCTGGATATACTCCACCTGGTTCTTACTCTCTTAAAATGAAGATGTATGATGCAAACAAGCAGGAACTGACATGCATAGCCTTCGATTTTGACATTGGGTTTGCAGCTTCTGTGGCTGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

155

Amino Acids

16.56

Weight (kDa)

5.15

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 27 - 145 3.2e-26 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AciI CCGC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 2 cut(s) 13, 178
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 340, 355
AluBI AGCT 3 cut(s) 87, 174, 446
AluI AGCT 3 cut(s) 87, 174, 446
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 2 cut(s) 406, 449
Ama87I CYCGRG 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 185, 443
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AsuC2I CCSGG 3 cut(s) 127, 157, 158
AsuHPI GGTGA 5 cut(s) 13, 199, 209, 235, 320
AvaI CYCGRG 1 cut(s) 156
BbvI GCAGC 2 cut(s) 172, 455
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 403, 437
BciT130I CCWGG 2 cut(s) 342, 357
BcnI CCSGG 3 cut(s) 127, 157, 158
BcoDI GTCTC 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 186, 444
BlsI GCNGC 2 cut(s) 187, 445
Bme1390I CCNGG 5 cut(s) 127, 157, 158, 342, 357
BmeT110I CYCGRG 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 232
BmrFI CCNGG 5 cut(s) 127, 157, 158, 342, 357
BmsI GCATC 1 cut(s) 379
BpuMI CCSGG 3 cut(s) 127, 157, 158
BsaJI CCNNGG 2 cut(s) 156, 157
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 342, 357
BseDI CCNNGG 2 cut(s) 156, 157
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 172, 455
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 3 cut(s) 126, 157, 210
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 40
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 156
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 156, 157
Bst2UI CCWGG 2 cut(s) 342, 357
Bst4CI ACNGT 2 cut(s) 57, 260
BstC8I GCNNGC 3 cut(s) 164, 168, 172
BstDEI CTNAG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 110, 452
BstNI CCWGG 2 cut(s) 342, 357
BstNSI RCATGY 1 cut(s) 414
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 5 cut(s) 125, 155, 156, 340, 355
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 172, 455
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 164, 168, 172
CaiI CAGNNNCTG 2 cut(s) 406, 449
Cfr9I CCCGGG 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 355
CviAII CATG 2 cut(s) 269, 411
CviJI RGCY 8 cut(s) 5, 87, 130, 166, 174, 419, 446, 455
CviKI_1 RGCY 8 cut(s) 5, 87, 130, 166, 174, 419, 446, 455
DdeI CTNAG 1 cut(s) 6
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 156
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 340, 355
EcoT22I ATGCAT 1 cut(s) 416
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 2 cut(s) 272, 414
FaiI YATR 7 cut(s) 111, 238, 270, 348, 387, 412, 416
FatI CATG 2 cut(s) 268, 410
Fnu4HI GCNGC 2 cut(s) 186, 444
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 186, 444
GluI GCNGC 2 cut(s) 186, 444
HapII CCGG 3 cut(s) 126, 157, 210
Hin1II CATG 2 cut(s) 272, 414
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 2 cut(s) 61, 200
HpaII CCGG 3 cut(s) 126, 157, 210
HphI GGTGA 5 cut(s) 13, 199, 209, 235, 320
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 49, 430
HpyCH4III ACNGT 2 cut(s) 57, 260
HpyCH4IV ACGT 2 cut(s) 81, 231
HpyCH4V TGCA 3 cut(s) 392, 414, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 452
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 81, 231
Hsp92II CATG 2 cut(s) 272, 414
Lsp1109I GCAGC 2 cut(s) 172, 455
LweI GCATC 1 cut(s) 379
MabI ACCWGGT 1 cut(s) 355
MaeII ACGT 2 cut(s) 81, 231
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 2 cut(s) 41, 391
MluCI AATT 2 cut(s) 218, 335
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 38, 41, 206
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 2 cut(s) 372, 463
MspI CCGG 3 cut(s) 126, 157, 210
MspR9I CCNGG 5 cut(s) 127, 157, 158, 342, 357
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 2 cut(s) 342, 357
MwoI GCNNNNNNNGC 2 cut(s) 110, 452
NciI CCSGG 3 cut(s) 127, 157, 158
NlaIII CATG 2 cut(s) 272, 414
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 1 cut(s) 414
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 187, 445
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 340, 355
PspEI GGTNACC 1 cut(s) 121
PspGI CCWGG 2 cut(s) 340, 355
PstNI CAGNNNCTG 2 cut(s) 406, 449
SaqAI TTAA 2 cut(s) 372, 463
SatI GCNGC 2 cut(s) 186, 444
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 5 cut(s) 127, 157, 158, 342, 357
SexAI ACCWGGT 1 cut(s) 355
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 192
SmaI CCCGGG 1 cut(s) 158
Sse9I AATT 2 cut(s) 218, 335
SsiI CCGC 1 cut(s) 24
StyD4I CCNGG 5 cut(s) 125, 155, 156, 340, 355
TaaI ACNGT 2 cut(s) 57, 260
TaiI ACGT 2 cut(s) 84, 234
TaqI TCGA 1 cut(s) 423
TasI AATT 2 cut(s) 218, 335
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 372, 463
Tru9I TTAA 2 cut(s) 372, 463
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 185, 443
TspDTI ATGAA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 156
TspRI CASTG 1 cut(s) 265
XceI RCATGY 1 cut(s) 414
XmaI CCCGGG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.