Prupe.7G092000_v2.0.a1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013093
Physical Location & Seq
Reverse (-)
12488011 .. 12488856
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G092000.1

Sequence Viewer

Length: 846 bp
ATGAAAGGAGTGAGAGGAAAATTTCTCAAGAAATTGAAGTCCATCCCAACAATTGGCACCTTCACAAATGGCCTGCTCTTTCAGCTGAACCCCACAGAAAAGTTCTTCAATCACAACCATCAAACACTGTCTCTGCGAGTTCACAATGATGAAGAAGAGCTCAAAGATGAAGATATGGAATTCGATTTCAATGTTGGCCACAAGGAGAATATTGTTATACCACCCTCCATGAAGTCCACAGAGACAGTGCCTTCCAATGATAGCTCGGGGGATATGGTCTTGTCTCACATCGATTTGGAGCATGAAATTTTTCATGAAGCAAAGGATGAGGAGGAGGAACAACATCCATCTTTATCAGATTTTGAGGAGAAGTGTCCACCAGGAGGAGGCAATTCTGTCATTCTCTACTCAACAAGCTTGACAGGTGTCAGAAAAACGTTTGAGGCATGCAAGGCTATCCGGTTTTTGCTGGAAAGCTTCAAAGTATCGGTGCATGAGAGGGACGTTTCGATGCACATGGGATTCAGGGAAGAGTTGTGGAGGATATTTGGTGGTAGAGTGATCCCTCCAAGGCTTTTCATCAAGGGAAGATACATTGGAGGAGCTGATGAAGTAATAGGGCTTCATGAGCAAGGGAAGCTGAAGAAGCTCCTAAAAGGAATCCCAATAGACCTATCTAACTCCCCATGCACCGGCTGTGCCAACATGCGTTTTGTGGTGTGCTTCAACTGCAATGGCAGTCGCAGAGTCTTCAAAGACAGTGATCTTGATGAGACTGATGAGCTGCACATTAGATGTCCCGAGTGCAATGAAAATGGTTTAGTTAAGTGCTCCATCTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

282

Amino Acids

31.79

Weight (kDa)

5.76

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11773 AT3G11773 AT5G06470
fragaria_vesca FvH4_6g20660
malus_domestica MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica Prupe.7G092000_v2.0.a1
pyrus_communis pycom14g03560
rosa_chinensis RchiOBHm_Chr3g0476541
rosa_laevigata RLG00000023763
rosa_multiflora Rmu_sc0004556.1_g000002
rosa_roxburghii Rroxscaffold_6G00405240
rosa_rugosa Rorug03G0154700
rosa_samantha Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana Rw3G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 53
AclI AACGTT 1 cut(s) 437
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 3 cut(s) 20, 179, 306
AcuI CTGAAG 1 cut(s) 662
AfiI CCNNNNNNNGG 4 cut(s) 53, 383, 386, 692
AgsI TTSAA 6 cut(s) 37, 109, 190, 481, 727, 754
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 9 cut(s) 85, 160, 264, 417, 477, 605, 640, 649, 784
AluI AGCT 9 cut(s) 85, 160, 264, 417, 477, 605, 640, 649, 784
Alw21I GWGCWC 2 cut(s) 162, 833
Alw26I GTCTC 4 cut(s) 135, 236, 288, 767
AlwI GGATC 1 cut(s) 556
Ama87I CYCGRG 2 cut(s) 265, 800
AoxI GGCC 2 cut(s) 70, 196
ApeKI GCWGC 2 cut(s) 784, 840
ApoI RAATTY 3 cut(s) 20, 179, 306
Asp700I GAANNNNTTC 1 cut(s) 309
AvaI CYCGRG 2 cut(s) 265, 800
BalI TGGCCA 1 cut(s) 198
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 162, 833
BbvI GCAGC 2 cut(s) 771, 827
BccI CCATC 4 cut(s) 50, 126, 355, 842
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 4 cut(s) 135, 236, 288, 767
BisI GCNGC 2 cut(s) 785, 841
BlsI GCNGC 2 cut(s) 786, 842
Bme1390I CCNGG 1 cut(s) 381
BmeT110I CYCGRG 2 cut(s) 265, 800
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 742
BpuEI CTTGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 569
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 383, 386, 692
Bse118I RCCGGY 1 cut(s) 692
Bse3DI GCAATG 2 cut(s) 739, 814
BseBI CCWGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 569
BseGI GGATG 3 cut(s) 42, 331, 343
BseLI CCNNNNNNNGG 4 cut(s) 53, 383, 386, 692
BseMI GCAATG 2 cut(s) 739, 814
BseRI GAGGAG 5 cut(s) 344, 347, 380, 399, 615
BseXI GCAGC 2 cut(s) 771, 827
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 2 cut(s) 72, 198
BshNI GGYRCC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 162, 833
BsiHKCI CYCGRG 2 cut(s) 265, 800
BsiSI CCGG 2 cut(s) 460, 693
BslFI GGGAC 2 cut(s) 515, 783
BslI CCNNNNNNNGG 4 cut(s) 53, 383, 386, 692
BsmAI GTCTC 4 cut(s) 135, 236, 288, 767
BsmFI GGGAC 2 cut(s) 515, 783
BsnI GGCC 2 cut(s) 72, 198
BsoBI CYCGRG 2 cut(s) 265, 800
Bsp1286I GDGCHC 2 cut(s) 162, 833
Bsp143I GATC 2 cut(s) 561, 763
BspANI GGCC 2 cut(s) 72, 198
BspDI ATCGAT 1 cut(s) 291
BspHI TCATGA 2 cut(s) 313, 625
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 556
BspQI GCTCTTC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 739, 814
BsrFI RCCGGY 1 cut(s) 692
BssAI RCCGGY 1 cut(s) 692
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 2 cut(s) 561, 763
BssT1I CCWWGG 1 cut(s) 569
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 129, 247, 761
Bst6I CTCTTC 2 cut(s) 150, 525
BstC8I GCNNGC 2 cut(s) 74, 448
BstF5I GGATG 3 cut(s) 42, 331, 343
BstKTI GATC 2 cut(s) 564, 766
BstMAI GTCTC 4 cut(s) 135, 236, 288, 767
BstMBI GATC 2 cut(s) 561, 763
BstMWI GCNNNNNNNGC 7 cut(s) 82, 452, 628, 637, 646, 729, 837
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 2 cut(s) 450, 709
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 771, 827
BstV2I GAAGAC 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 2 cut(s) 72, 198
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 3 cut(s) 42, 331, 343
BtsIMutI CAGTG 3 cut(s) 125, 252, 766
Cac8I GCNNGC 2 cut(s) 74, 448
CciI TCATGA 2 cut(s) 313, 625
Cfr10I RCCGGY 1 cut(s) 692
ClaI ATCGAT 1 cut(s) 291
CviAII CATG 9 cut(s) 229, 302, 314, 447, 494, 517, 626, 687, 706
DpnI GATC 2 cut(s) 563, 765
DpnII GATC 2 cut(s) 561, 763
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 150, 525
EarI CTCTTC 2 cut(s) 150, 525
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 569
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 662
Eco88I CYCGRG 2 cut(s) 265, 800
EcoICRI GAGCTC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 569
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 9 cut(s) 232, 305, 317, 450, 497, 520, 629, 690, 709
FaqI GGGAC 2 cut(s) 515, 783
FatI CATG 9 cut(s) 228, 301, 313, 446, 493, 516, 625, 686, 705
Fnu4HI GCNGC 2 cut(s) 785, 841
FokI GGATG 3 cut(s) 29, 330, 338
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 785, 841
GluI GCNGC 2 cut(s) 785, 841
HaeIII GGCC 2 cut(s) 72, 198
HapII CCGG 2 cut(s) 460, 693
Hin1II CATG 9 cut(s) 232, 305, 317, 450, 497, 520, 629, 690, 709
HindIII AAGCTT 2 cut(s) 415, 475
HinfI GANTC 3 cut(s) 522, 660, 747
HpaII CCGG 2 cut(s) 460, 693
Hpy166II GTNNAC 3 cut(s) 142, 237, 377
Hpy188I TCNGA 2 cut(s) 358, 431
Hpy188III TCNNGA 5 cut(s) 28, 314, 626, 767, 800
Hpy8I GTNNAC 3 cut(s) 142, 237, 377
HpyAV CCTTC 2 cut(s) 70, 261
HpyCH4III ACNGT 3 cut(s) 129, 247, 761
HpyCH4IV ACGT 2 cut(s) 437, 504
HpyCH4V TGCA 7 cut(s) 450, 493, 514, 690, 732, 787, 807
HpyF10VI GCNNNNNNNGC 7 cut(s) 82, 452, 628, 637, 646, 729, 837
HpySE526I ACGT 2 cut(s) 437, 504
Hsp92II CATG 9 cut(s) 232, 305, 317, 450, 497, 520, 629, 690, 709
Kzo9I GATC 2 cut(s) 561, 763
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 4 cut(s) 298, 602, 654, 836
LpnPI CCDG 8 cut(s) 86, 366, 393, 408, 455, 473, 511, 706
Lsp1109I GCAGC 2 cut(s) 771, 827
LweI GCATC 1 cut(s) 501
MaeII ACGT 2 cut(s) 437, 504
MalI GATC 2 cut(s) 563, 765
MboI GATC 2 cut(s) 561, 763
MboII GAAGA 8 cut(s) 97, 164, 167, 182, 542, 600, 655, 742
MfeI CAATTG 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 162, 833
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 6 cut(s) 20, 32, 51, 179, 306, 391
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 756
Mox20I TGGCCA 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 309
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 2 cut(s) 460, 693
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 7 cut(s) 82, 452, 628, 637, 646, 729, 837
NdeII GATC 2 cut(s) 561, 763
NlaIII CATG 9 cut(s) 232, 305, 317, 450, 497, 520, 629, 690, 709
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 2 cut(s) 450, 709
PaeI GCATGC 1 cut(s) 450
PagI TCATGA 2 cut(s) 313, 625
PciSI GCTCTTC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 522, 660
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 2 cut(s) 786, 842
PleI GAGTC 1 cut(s) 755
PpsI GAGTC 1 cut(s) 755
PshAI GACNNNNGTC 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 147
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 2 cut(s) 785, 841
Sau3AI GATC 2 cut(s) 561, 763
SchI GAGTC 1 cut(s) 756
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 2 cut(s) 162, 833
SfaNI GCATC 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 450
Sse9I AATT 6 cut(s) 20, 32, 51, 179, 306, 391
SspI AATATT 1 cut(s) 211
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 3 cut(s) 129, 247, 761
TaiI ACGT 2 cut(s) 440, 507
TaqI TCGA 3 cut(s) 183, 291, 509
TasI AATT 6 cut(s) 20, 32, 51, 179, 306, 391
TfiI GAWTC 2 cut(s) 522, 660
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 3 cut(s) 132, 252, 766
TseI GCWGC 2 cut(s) 784, 840
TspRI CASTG 3 cut(s) 132, 252, 766
Van91I CCANNNNNTGG 1 cut(s) 53
XapI RAATTY 3 cut(s) 20, 179, 306
XceI RCATGY 2 cut(s) 450, 709
XmnI GAANNNNTTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.