RLG00000023763

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013093
Physical Location & Seq
Reverse (-)
27984712 .. 27985985
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023763

Sequence Viewer

Length: 786 bp
ATGAGAGGAATGAGGGGAAAATTTCTCAAGACATTGAAGTCCATCCCAACAATTAGTTCTTTCAGACATGGCCTGGTTTTTCAGCTAAGCCCCACAGAAAAGATTTCCATTCGGAAGAGTCACAGTTTCTCCGCTGAGCTTGTAGTTAAGGAAGCACTCAAGGATGAAGATAAAGAATTGGGGTTCAATGTTGGTGAGAGTGTTACGCCACCATTTTTAGATTTTGAGGAAGAAACAGACGAGGACGAAAACCTTCCATCTTTGTTAGATTTCGAAGAGAAATGTCCACCCGGGGGAGGCGACTCTGTCATTCTTTACTCCACAAGCTTGACAGGTATCAGAAAAACATTTGAGGACTGCAAGGCAATCCGATTTCTGCTTGAAAGTTTCAAGGTAACGGTGCAAGAGAGGGACGTTTCGATGCACATGGAGTTCAGGGAAGAGTTGTGGAAGATGTTTGATAGTAAAGTGATCCCTCCGAGGCTTTTCATCAAGGGGAGGTACATTGGAGGAGCTGATGAAGTAGTAGAGCTTCATGAGCAAGGAAAACTGAAGAAGCTCTTAGAAGGAATCCCACAAGACCTGTCTGATTCACCATGTAGCGGCTGTGCCAACATGCGGTTTGTCGTGTGCTTCAATTGCAATGGAAGTCGAAAGGTGTTTGCAGACAGTGATCATGAAAATGATGAACTGCACGTTAGATGTGGAGAGTGTAACGAAAATGGTCTGATCAGGTATGTGCAGGTAGATGAGAGTTCTTATCTTCAGATACCAAATTCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

262

Amino Acids

29.61

Weight (kDa)

5.16

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 103 - 169 6.9e-12 Glutaredoxin
GRXCR1-2_C PF23733 200 - 246 3.3e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11773 AT3G11773 AT5G06470
fragaria_vesca FvH4_6g20660
malus_domestica MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica Prupe.7G092000_v2.0.a1
pyrus_communis pycom14g03560
rosa_chinensis RchiOBHm_Chr3g0476541
rosa_laevigata RLG00000023763
rosa_multiflora Rmu_sc0004556.1_g000002
rosa_roxburghii Rroxscaffold_6G00405240
rosa_rugosa Rorug03G0154700
rosa_samantha Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana Rw3G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 733
AciI CCGC 3 cut(s) 132, 603, 619
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 2 cut(s) 20, 775
AcuI CTGAAG 2 cut(s) 572, 749
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 4 cut(s) 293, 296, 602, 618
AgsI TTSAA 5 cut(s) 37, 187, 383, 391, 637
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 6 cut(s) 85, 139, 327, 515, 532, 559
AluI AGCT 6 cut(s) 85, 139, 327, 515, 532, 559
AlwI GGATC 1 cut(s) 466
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 70
ApoI RAATTY 2 cut(s) 20, 775
Asp700I GAANNNNTTC 1 cut(s) 252
AsuC2I CCSGG 2 cut(s) 291, 292
AsuHPI GGTGA 2 cut(s) 206, 585
AsuII TTCGAA 2 cut(s) 273, 779
AvaI CYCGRG 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BccI CCATC 2 cut(s) 50, 265
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 2 cut(s) 673, 729
BcnI CCSGG 2 cut(s) 291, 292
BfuAI ACCTGC 1 cut(s) 733
BisI GCNGC 1 cut(s) 604
BlpI GCTNAGC 2 cut(s) 86, 135
BlsI GCNGC 1 cut(s) 605
Bme1390I CCNGG 3 cut(s) 74, 291, 292
BmeT110I CYCGRG 1 cut(s) 290
BmrFI CCNGG 3 cut(s) 74, 291, 292
BmsI GCATC 1 cut(s) 411
Bpu1102I GCTNAGC 2 cut(s) 86, 135
Bpu14I TTCGAA 2 cut(s) 273, 779
BpuEI CTTGAG 2 cut(s) 11, 143
BpuMI CCSGG 2 cut(s) 291, 292
BsaJI CCNNGG 3 cut(s) 290, 291, 479
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 293, 296, 602, 618
Bse3DI GCAATG 1 cut(s) 649
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 3 cut(s) 290, 291, 479
BseGI GGATG 2 cut(s) 42, 169
BseLI CCNNNNNNNGG 4 cut(s) 293, 296, 602, 618
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 525
BsgI GTGCAG 2 cut(s) 677, 761
BshFI GGCC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 4 cut(s) 293, 296, 602, 618
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 2 cut(s) 273, 779
Bsp143I GATC 3 cut(s) 471, 673, 729
Bsp1720I GCTNAGC 2 cut(s) 86, 135
BspACI CCGC 3 cut(s) 132, 603, 619
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 127
BspHI TCATGA 2 cut(s) 535, 676
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 1 cut(s) 466
BspT104I TTCGAA 2 cut(s) 273, 779
BsrDI GCAATG 1 cut(s) 649
BssECI CCNNGG 3 cut(s) 290, 291, 479
BssMI GATC 3 cut(s) 471, 673, 729
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 125, 400, 671
Bst6I CTCTTC 3 cut(s) 110, 270, 435
BstBI TTCGAA 2 cut(s) 273, 779
BstDEI CTNAG 3 cut(s) 86, 135, 562
BstF5I GGATG 2 cut(s) 42, 169
BstKTI GATC 3 cut(s) 474, 676, 732
BstMBI GATC 3 cut(s) 471, 673, 729
BstMWI GCNNNNNNNGC 2 cut(s) 538, 639
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 3 cut(s) 72, 289, 290
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 42, 169
BtsIMutI CAGTG 1 cut(s) 676
BveI ACCTGC 1 cut(s) 733
CciI TCATGA 2 cut(s) 535, 676
Cfr9I CCCGGG 1 cut(s) 290
Csp6I GTAC 1 cut(s) 502
CviAII CATG 6 cut(s) 68, 427, 536, 597, 616, 677
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 3 cut(s) 86, 135, 562
DpnI GATC 3 cut(s) 473, 675, 731
DpnII GATC 3 cut(s) 471, 673, 729
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 3 cut(s) 110, 270, 435
EarI CTCTTC 3 cut(s) 110, 270, 435
Eco57I CTGAAG 2 cut(s) 572, 749
Eco88I CYCGRG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 6 cut(s) 71, 430, 539, 600, 619, 680
FaiI YATR 7 cut(s) 69, 428, 537, 598, 617, 678, 738
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 1 cut(s) 425
FatI CATG 6 cut(s) 67, 426, 535, 596, 615, 676
FbaI TGATCA 2 cut(s) 673, 729
Fnu4HI GCNGC 1 cut(s) 604
FokI GGATG 2 cut(s) 29, 176
Fsp4HI GCNGC 1 cut(s) 604
GluI GCNGC 1 cut(s) 604
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 291
Hin1II CATG 6 cut(s) 71, 430, 539, 600, 619, 680
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 4 cut(s) 118, 302, 570, 590
HpaII CCGG 1 cut(s) 291
HphI GGTGA 2 cut(s) 206, 585
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 8 cut(s) 65, 114, 341, 371, 480, 589, 729, 768
Hpy188III TCNNGA 3 cut(s) 28, 536, 677
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 263, 560
HpyCH4III ACNGT 3 cut(s) 125, 400, 671
HpyCH4IV ACGT 2 cut(s) 414, 696
HpyCH4V TGCA 7 cut(s) 360, 403, 424, 642, 665, 694, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 538, 639
HpyF3I CTNAG 3 cut(s) 86, 135, 562
HpySE526I ACGT 2 cut(s) 414, 696
Hsp92II CATG 6 cut(s) 71, 430, 539, 600, 619, 680
Ksp22I TGATCA 2 cut(s) 673, 729
Kzo9I GATC 3 cut(s) 471, 673, 729
LmnI GCTCC 1 cut(s) 512
LpnPI CCDG 8 cut(s) 59, 86, 304, 318, 421, 596, 718, 728
LweI GCATC 1 cut(s) 411
MaeII ACGT 2 cut(s) 414, 696
MaeIII GTNAC 4 cut(s) 119, 202, 394, 713
MalI GATC 3 cut(s) 473, 675, 731
MboI GATC 3 cut(s) 471, 673, 729
MboII GAAGA 8 cut(s) 127, 179, 242, 287, 452, 463, 565, 755
MfeI CAATTG 1 cut(s) 637
MluCI AATT 5 cut(s) 20, 51, 176, 637, 775
MlyI GAGTC 2 cut(s) 127, 296
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 3 cut(s) 74, 291, 292
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 538, 639
NciI CCSGG 2 cut(s) 291, 292
NdeII GATC 3 cut(s) 471, 673, 729
NlaIII CATG 6 cut(s) 71, 430, 539, 600, 619, 680
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 619
NspV TTCGAA 2 cut(s) 273, 779
PagI TCATGA 2 cut(s) 535, 676
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 570, 590
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 605
PleI GAGTC 2 cut(s) 126, 296
PpsI GAGTC 2 cut(s) 126, 296
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 604
Sau3AI GATC 3 cut(s) 471, 673, 729
SchI GAGTC 2 cut(s) 127, 296
ScrFI CCNGG 3 cut(s) 74, 291, 292
SfaNI GCATC 1 cut(s) 411
SfuI TTCGAA 2 cut(s) 273, 779
SmaI CCCGGG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 26, 158
SmoI CTYRAG 2 cut(s) 26, 158
Sse9I AATT 5 cut(s) 20, 51, 176, 637, 775
SsiI CCGC 3 cut(s) 132, 603, 619
StyD4I CCNGG 3 cut(s) 72, 289, 290
TaaI ACNGT 3 cut(s) 125, 400, 671
TaiI ACGT 2 cut(s) 417, 699
TaqI TCGA 4 cut(s) 273, 419, 652, 779
TasI AATT 5 cut(s) 20, 51, 176, 637, 775
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 2 cut(s) 570, 590
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 6 cut(s) 180, 478, 524, 534, 693, 702
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 1 cut(s) 676
Tth111I GACNNNGTC 1 cut(s) 305
XapI RAATTY 2 cut(s) 20, 775
XceI RCATGY 1 cut(s) 619
XmaI CCCGGG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.