Rroxscaffold_6G00405240

Glutaredoxin

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
27647411 .. 27648739
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405240.1

Sequence Viewer

Length: 507 bp
ATGTCCACCCGGGGAGGCGACTCTGTCATTCTTTACTCAACAAGCTTGACAGGTATCAGAAAAACATTTGAGGACTGCAAGGCAATCCGATTTCTGCTTGAAAGTTTCAAGGTAACGGTGCAAGAGAGGGACGTTTCGATGCACATGGAGTTCAGGGAAGAGTTGTGGAAGATGTTTGATAGTAAAGTGATCCCTCCGAGGCTTTTCATCAAGGGGAGGTACATTGGAGGAGCTGATGAAGTAGTAGTGCTTCATGAGCAAGGAAAGCTGAAGAAGCTCTTAGAAGGAATCCCACAAGACCTGTCTGATTCGCCATGTAGCGGCTGTGCCAACATGCGGTTTGTTGTGTGCTTCAATTGCAATGGAAGTCGAAAGGTGTTTGCAGACAGTGATCATGAAAATGATGAACTGCACGTTAAATGTGCAGAGTGTAACGAAAATGGTCTGATCAGGTATGTGCAGGTAGATGAGAGTTCTTCTTATCTTCAGATACCAAATTCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.08

Weight (kDa)

5.83

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 9 - 75 2.9e-12 Glutaredoxin
GRXCR1-2_C PF23733 106 - 152 1.1e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11773 AT3G11773 AT5G06470
fragaria_vesca FvH4_6g20660
malus_domestica MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica Prupe.7G092000_v2.0.a1
pyrus_communis pycom14g03560
rosa_chinensis RchiOBHm_Chr3g0476541
rosa_laevigata RLG00000023763
rosa_multiflora Rmu_sc0004556.1_g000002
rosa_roxburghii Rroxscaffold_6G00405240
rosa_rugosa Rorug03G0154700
rosa_samantha Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana Rw3G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 451
AciI CCGC 2 cut(s) 321, 337
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 2 cut(s) 290, 470
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 320, 336
AgsI TTSAA 3 cut(s) 101, 109, 355
AluBI AGCT 4 cut(s) 45, 233, 268, 277
AluI AGCT 4 cut(s) 45, 233, 268, 277
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 9
ApoI RAATTY 1 cut(s) 496
AsuC2I CCSGG 2 cut(s) 10, 11
AsuII TTCGAA 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BclI TGATCA 2 cut(s) 391, 447
BcnI CCSGG 2 cut(s) 10, 11
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 323
Bme1390I CCNGG 2 cut(s) 10, 11
BmeT110I CYCGRG 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 10, 11
BmsI GCATC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 500
BpuMI CCSGG 2 cut(s) 10, 11
BsaJI CCNNGG 3 cut(s) 9, 10, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 336
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 3 cut(s) 9, 10, 197
BseLI CCNNNNNNNGG 2 cut(s) 320, 336
BseMI GCAATG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 243
BsgI GTGCAG 3 cut(s) 395, 444, 479
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 320, 336
BsmFI GGGAC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 500
Bsp143I GATC 3 cut(s) 189, 391, 447
BspACI CCGC 2 cut(s) 321, 337
BspHI TCATGA 2 cut(s) 253, 394
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 9, 10, 197
BssMI GATC 3 cut(s) 189, 391, 447
Bst4CI ACNGT 2 cut(s) 118, 389
Bst6I CTCTTC 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 500
BstDEI CTNAG 1 cut(s) 280
BstKTI GATC 3 cut(s) 192, 394, 450
BstMBI GATC 3 cut(s) 189, 391, 447
BstMWI GCNNNNNNNGC 4 cut(s) 256, 265, 274, 357
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 8, 9
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 451
CciI TCATGA 2 cut(s) 253, 394
Cfr9I CCCGGG 1 cut(s) 9
Csp6I GTAC 1 cut(s) 220
CviAII CATG 5 cut(s) 145, 254, 315, 334, 395
CviJI RGCY 6 cut(s) 45, 202, 233, 268, 277, 324
CviKI_1 RGCY 6 cut(s) 45, 202, 233, 268, 277, 324
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 280
DpnI GATC 3 cut(s) 191, 393, 449
DpnII GATC 3 cut(s) 189, 391, 447
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 290, 470
Eco88I CYCGRG 1 cut(s) 9
FaeI CATG 5 cut(s) 148, 257, 318, 337, 398
FaiI YATR 6 cut(s) 146, 255, 316, 335, 396, 456
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 143
FatI CATG 5 cut(s) 144, 253, 314, 333, 394
FbaI TGATCA 2 cut(s) 391, 447
Fnu4HI GCNGC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 322
HapII CCGG 1 cut(s) 10
Hin1II CATG 5 cut(s) 148, 257, 318, 337, 398
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 3 cut(s) 20, 288, 308
HpaII CCGG 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 59, 89, 198, 307, 447, 489
Hpy188III TCNNGA 2 cut(s) 254, 395
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 2 cut(s) 118, 389
HpyCH4IV ACGT 2 cut(s) 132, 414
HpyCH4V TGCA 8 cut(s) 78, 121, 142, 360, 383, 412, 425, 460
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 265, 274, 357
HpyF3I CTNAG 1 cut(s) 280
HpySE526I ACGT 2 cut(s) 132, 414
Hsp92II CATG 5 cut(s) 148, 257, 318, 337, 398
Ksp22I TGATCA 2 cut(s) 391, 447
Kzo9I GATC 3 cut(s) 189, 391, 447
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 6 cut(s) 23, 36, 139, 314, 436, 446
LweI GCATC 1 cut(s) 129
MaeII ACGT 2 cut(s) 132, 414
MaeIII GTNAC 2 cut(s) 112, 431
MalI GATC 3 cut(s) 191, 393, 449
MboI GATC 3 cut(s) 189, 391, 447
MboII GAAGA 5 cut(s) 170, 181, 283, 468, 476
MfeI CAATTG 1 cut(s) 355
MluCI AATT 2 cut(s) 355, 496
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 7 cut(s) 8, 64, 120, 192, 204, 210, 221
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 10, 11
MunI CAATTG 1 cut(s) 355
MwoI GCNNNNNNNGC 4 cut(s) 256, 265, 274, 357
NciI CCSGG 2 cut(s) 10, 11
NdeII GATC 3 cut(s) 189, 391, 447
NlaIII CATG 5 cut(s) 148, 257, 318, 337, 398
NspI RCATGY 1 cut(s) 337
NspV TTCGAA 1 cut(s) 500
PagI TCATGA 2 cut(s) 253, 394
PfeI GAWTC 2 cut(s) 288, 308
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 323
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 1 cut(s) 322
Sau3AI GATC 3 cut(s) 189, 391, 447
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 10, 11
SfaNI GCATC 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 500
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 2 cut(s) 355, 496
SsiI CCGC 2 cut(s) 321, 337
StyD4I CCNGG 2 cut(s) 8, 9
TaaI ACNGT 2 cut(s) 118, 389
TaiI ACGT 2 cut(s) 135, 417
TaqI TCGA 3 cut(s) 137, 370, 500
TasI AATT 2 cut(s) 355, 496
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 288, 308
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 394
TspDTI ATGAA 5 cut(s) 196, 242, 252, 411, 420
TspMI CCCGGG 1 cut(s) 9
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.