FvH4_6g20660

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013093
Physical Location & Seq
Forward (+)
14236013 .. 14237810
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20660.t1

Sequence Viewer

Length: 759 bp
ATGAGAGGAATGAGGGGAAAACTTCTCAAGACATTGAAGTCCATCCCAACAATTAGTTCTTTGAGACATGGCCTGGTGTTTCAGCTAAGCCCCACAGAAAAGATTTCCATTCGGAAGACTCAAAGTTTCTCCTCGGAGCTTGTAGTTAAGGAAGCACTCAAGGCTGAAGATAGAGAATTGGGGTTCAATGTTGACGACAATGGGAATGTTACGCCACCGTTTTTAGATTTTGAGGAAGAAACAGACGAGGAGCAAGACCTTCCATCTTTGTTAGATTTCGAAGAGAAATGTCCACCCGGGGGAGGCGATTGTGTCATTCTTTACTCGACAAGCTTGACAGGTATCAGAAAAACATTCGAGGACTGCAAGGCAATCCGGTTTCTGCTCGAAAGTTTCAAGGTAACGGTGCAAGAGAGGGACGTTTCGATGCACATAGAATTCAGGGAAGAGTTGTGGAAGATGTTTGATACTAAAGTGATCCCACCGAGGCTTTTCATCAAGGGGAGGTACATTGGAGGAGCTGCTGAAGTAGTAGTGCTTCATGAGCAAGGAAAGCTGAAGAAGCTCTTAGAAGGAATCCCACTAGACTTGTCTGAGTCGCCATGTAGCAGCTGCGCCAACATGCGTTTTGTTGTGTGCTTCAATTGCCATGGAAGTCGAAAGGTGTTTGCAGACGGTGATAATGTGAATGATGAACTGCACGTTAGATGCGCAGAGTGTAACGAAAATGGTCTGATCAGGTGTTCCATCTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

253

Amino Acids

28.39

Weight (kDa)

5.41

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 105 - 171 5e-11 Glutaredoxin
GRXCR1-2_C PF23733 202 - 252 1.4e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11773 AT3G11773 AT5G06470
fragaria_vesca FvH4_6g20660
malus_domestica MD12G1042900.v1.1 MD14G1041800.v1.1
prunus_persica Prupe.7G092000_v2.0.a1
pyrus_communis pycom14g03560
rosa_chinensis RchiOBHm_Chr3g0476541
rosa_laevigata RLG00000023763
rosa_multiflora Rmu_sc0004556.1_g000002
rosa_roxburghii Rroxscaffold_6G00405240
rosa_rugosa Rorug03G0154700
rosa_samantha Rh3AG205800 Rh3BG238200 Rh3CG232000 Rh3DG231900
rosa_wichuraiana Rw3G018730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
Acc16I TGCGCA 1 cut(s) 712
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 3 cut(s) 186, 546, 578
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 299, 302
AgsI TTSAA 4 cut(s) 37, 187, 397, 643
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 7 cut(s) 85, 139, 333, 521, 556, 565, 612
AluI AGCT 7 cut(s) 85, 139, 333, 521, 556, 565, 612
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 4 cut(s) 521, 609, 612, 753
ApoI RAATTY 1 cut(s) 437
AspLEI GCGC 2 cut(s) 617, 713
AsuC2I CCSGG 2 cut(s) 297, 298
AsuHPI GGTGA 1 cut(s) 689
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 4 cut(s) 508, 599, 621, 740
BccI CCATC 3 cut(s) 50, 271, 755
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 2 cut(s) 297, 298
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 584
BisI GCNGC 4 cut(s) 522, 610, 613, 754
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 4 cut(s) 523, 611, 614, 755
Bme1390I CCNGG 3 cut(s) 74, 297, 298
BmeT110I CYCGRG 1 cut(s) 296
BmrFI CCNGG 3 cut(s) 74, 297, 298
BmsI GCATC 2 cut(s) 417, 698
BpiI GAAGAC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 11, 143
BpuMI CCSGG 2 cut(s) 297, 298
BsaJI CCNNGG 5 cut(s) 132, 296, 297, 485, 649
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 302
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 5 cut(s) 132, 296, 297, 485, 649
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 299, 302
BseMII CTCAG 1 cut(s) 585
BseRI GAGGAG 3 cut(s) 121, 263, 531
BseXI GCAGC 4 cut(s) 508, 599, 621, 740
BsgI GTGCAG 1 cut(s) 683
BshFI GGCC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 2 cut(s) 297, 376
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 299, 302
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 477, 735
Bsp1720I GCTNAGC 1 cut(s) 86
Bsp19I CCATGG 1 cut(s) 649
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 586
BspHI TCATGA 1 cut(s) 541
BspPI GGATC 1 cut(s) 472
BspT104I TTCGAA 1 cut(s) 279
BssECI CCNNGG 5 cut(s) 132, 296, 297, 485, 649
BssMI GATC 2 cut(s) 477, 735
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 219, 406, 677
Bst6I CTCTTC 2 cut(s) 276, 441
BstBI TTCGAA 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 86, 568, 594
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 617, 713
BstKTI GATC 2 cut(s) 480, 738
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 2 cut(s) 477, 735
BstMWI GCNNNNNNNGC 5 cut(s) 161, 544, 553, 562, 645
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 3 cut(s) 72, 295, 296
BstV1I GCAGC 4 cut(s) 508, 599, 621, 740
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 1 cut(s) 42
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 617, 713
Cfr9I CCCGGG 1 cut(s) 296
Csp6I GTAC 1 cut(s) 508
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 5 cut(s) 68, 542, 603, 622, 650
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 86, 568, 594
DpnI GATC 2 cut(s) 479, 737
DpnII GATC 2 cut(s) 477, 735
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 276, 441
EarI CTCTTC 2 cut(s) 276, 441
Eco130I CCWWGG 1 cut(s) 649
Eco57I CTGAAG 3 cut(s) 186, 546, 578
Eco88I CYCGRG 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 5 cut(s) 71, 545, 606, 625, 653
FaiI YATR 6 cut(s) 69, 434, 543, 604, 623, 651
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 1 cut(s) 431
FatI CATG 5 cut(s) 67, 541, 602, 621, 649
FbaI TGATCA 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 522, 610, 613, 754
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 522, 610, 613, 754
FspBI CTAG 1 cut(s) 584
FspI TGCGCA 1 cut(s) 712
GlaI GCGC 2 cut(s) 616, 712
GluI GCNGC 4 cut(s) 522, 610, 613, 754
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 297, 376
HhaI GCGC 2 cut(s) 617, 713
Hin1II CATG 5 cut(s) 71, 545, 606, 625, 653
Hin6I GCGC 2 cut(s) 615, 711
HinP1I GCGC 2 cut(s) 615, 711
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 3 cut(s) 118, 576, 596
HpaII CCGG 2 cut(s) 297, 376
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 2 cut(s) 193, 293
Hpy188I TCNGA 5 cut(s) 114, 136, 347, 595, 735
Hpy188III TCNNGA 2 cut(s) 28, 542
Hpy8I GTNNAC 2 cut(s) 193, 293
HpyAV CCTTC 2 cut(s) 269, 566
HpyCH4III ACNGT 3 cut(s) 219, 406, 677
HpyCH4IV ACGT 2 cut(s) 420, 702
HpyCH4V TGCA 5 cut(s) 366, 409, 430, 671, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 544, 553, 562, 645
HpyF3I CTNAG 3 cut(s) 86, 568, 594
HpySE526I ACGT 2 cut(s) 420, 702
Hsp92II CATG 5 cut(s) 71, 545, 606, 625, 653
HspAI GCGC 2 cut(s) 615, 711
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 2 cut(s) 477, 735
LmnI GCTCC 3 cut(s) 136, 250, 518
LpnPI CCDG 7 cut(s) 59, 86, 310, 324, 389, 427, 724
Lsp1109I GCAGC 4 cut(s) 508, 599, 621, 740
LweI GCATC 2 cut(s) 417, 698
MaeI CTAG 1 cut(s) 584
MaeII ACGT 2 cut(s) 420, 702
MaeIII GTNAC 3 cut(s) 208, 400, 719
MalI GATC 2 cut(s) 479, 737
MboI GATC 2 cut(s) 477, 735
MboII GAAGA 7 cut(s) 127, 179, 248, 293, 458, 469, 571
MfeI CAATTG 1 cut(s) 643
MluCI AATT 4 cut(s) 51, 176, 437, 643
MlyI GAGTC 2 cut(s) 112, 605
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 2 cut(s) 297, 376
MspR9I CCNGG 3 cut(s) 74, 297, 298
MunI CAATTG 1 cut(s) 643
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 161, 544, 553, 562, 645
NciI CCSGG 2 cut(s) 297, 298
NcoI CCATGG 1 cut(s) 649
NdeII GATC 2 cut(s) 477, 735
NlaIII CATG 5 cut(s) 71, 545, 606, 625, 653
NsbI TGCGCA 1 cut(s) 712
NspI RCATGY 1 cut(s) 625
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 1 cut(s) 541
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 4 cut(s) 523, 611, 614, 755
PleI GAGTC 2 cut(s) 112, 604
PpsI GAGTC 2 cut(s) 112, 604
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 4 cut(s) 522, 610, 613, 754
Sau3AI GATC 2 cut(s) 477, 735
SchI GAGTC 2 cut(s) 112, 605
ScrFI CCNGG 3 cut(s) 74, 297, 298
SfaNI GCATC 2 cut(s) 417, 698
SfuI TTCGAA 1 cut(s) 279
SmaI CCCGGG 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 26, 158
SmoI CTYRAG 2 cut(s) 26, 158
Sse9I AATT 4 cut(s) 51, 176, 437, 643
SspMI CTAG 1 cut(s) 584
StyD4I CCNGG 3 cut(s) 72, 295, 296
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 3 cut(s) 219, 406, 677
TaiI ACGT 2 cut(s) 423, 705
TaqI TCGA 6 cut(s) 279, 326, 357, 387, 425, 658
TasI AATT 4 cut(s) 51, 176, 437, 643
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 4 cut(s) 521, 609, 612, 753
TspDTI ATGAA 3 cut(s) 484, 530, 708
TspMI CCCGGG 1 cut(s) 296
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 625
XmaI CCCGGG 1 cut(s) 296
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.