Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Reverse (-)

2180501 .. 2182538

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCGAATGTCTTGCTATCCCCAAACGGCTACGTATTTGCATCGCCTAAACCTCTTGGCAGATTCATCAATTCAAAGTCCGGCGGACGGAAACTTTTCTTCTCCGTCGTTAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGAGAAGGAGGTAGGAACAGTGAGTATGGAATGGTTAGCTGGAGAGAAGACGAAAGTGGTGGGAACATTTCCTCCTCGGAAGCCGCGTGGTTGGACTGGCTATGTTGAGAAAGATACTGCTGGTCAGACTAATGTTTACTCCATTGAGCCTGCAGTATATGTTGCAGAGAGCGCGATTAGCTCAGGTACTGCAGGATCATCGGCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCATTGCTCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTCGGGAAAGATGCCCCAACTCGACCCAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTTCAAGCCTTCTGAAATTGTTCAACCTTCTACCCCCTCCGTCACAGAAGCCCCACCGGTGGCCGAGCTAGAAACTTCACTGCCAGAAACTCCATCGGTGGCTCAGCAAGAAACCTCACTGCCGGAAACTATGGCTAGTGAGGCTCAGCCAGAGGCGTCTTCTGTTCCAACAACAAGTAGTACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

24.39

Weight (kDa)

4.71

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	244, 332
AciI	CCGC	2 cut(s)	84, 242
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	346, 700
AfiI	CCNNNNNNNGG	2 cut(s)	87, 577
AgeI	ACCGGT	1 cut(s)	574
AgsI	TTSAA	3 cut(s)	75, 523, 542
AloI	GAACNNNNNNTCC	2 cut(s)	214, 246
AluBI	AGCT	6 cut(s)	116, 197, 339, 425, 504, 586
AluI	AGCT	6 cut(s)	116, 197, 339, 425, 504, 586
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	2 cut(s)	347, 419
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	3 cut(s)	383, 419, 422
AsiGI	ACCGGT	1 cut(s)	574
Asp700I	GAANNNNTTC	2 cut(s)	95, 537
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	212, 669
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	395, 406, 434
BccI	CCATC	2 cut(s)	359, 619
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	5 cut(s)	29, 134, 168, 339, 373
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	2 cut(s)	587, 654
BfmI	CTRYAG	3 cut(s)	309, 348, 420
BisI	GCNGC	4 cut(s)	242, 384, 420, 423
BlpI	GCTNAGC	2 cut(s)	621, 663
BlsI	GCNGC	4 cut(s)	243, 385, 421, 424
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	491
BmsI	GCATC	3 cut(s)	50, 118, 445
BpiI	GAAGAC	2 cut(s)	212, 669
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	340
Bpu1102I	GCTNAGC	2 cut(s)	621, 663
BsaAI	YACGTR	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 577
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	87, 577
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	4 cut(s)	354, 363, 635, 677
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	222, 428
BseXI	GCAGC	3 cut(s)	395, 406, 434
Bsh1236I	CGCG	2 cut(s)	244, 332
BshFI	GGCC	1 cut(s)	581
BshTI	ACCGGT	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	81, 575, 641
BslI	CCNNNNNNNGG	2 cut(s)	87, 577
BsmAI	GTCTC	1 cut(s)	501
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	353
Bsp1720I	GCTNAGC	2 cut(s)	621, 663
BspACI	CCGC	2 cut(s)	84, 242
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	4 cut(s)	353, 364, 634, 676
BspFNI	CGCG	2 cut(s)	244, 332
BspMAI	CTGCAG	3 cut(s)	313, 352, 424
BspPI	GGATC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	1 cut(s)	353
BssNI	GRCGYC	1 cut(s)	674
Bst4CI	ACNGT	3 cut(s)	178, 488, 495
BstACI	GRCGYC	1 cut(s)	674
BstAPI	GCANNNNNTGC	2 cut(s)	401, 419
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	309, 397
BstDEI	CTNAG	6 cut(s)	340, 372, 500, 621, 663, 705
BstFNI	CGCG	2 cut(s)	244, 332
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	8 cut(s)	329, 336, 368, 392, 401, 410, 419, 659
BstSFI	CTRYAG	3 cut(s)	309, 348, 420
BstSNI	TACGTA	1 cut(s)	34
BstUI	CGCG	2 cut(s)	244, 332
BstV1I	GCAGC	3 cut(s)	395, 406, 434
BstV2I	GAAGAC	2 cut(s)	212, 669
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	581
BtgZI	GCGATG	1 cut(s)	27
BtsI	GCAGTG	3 cut(s)	483, 596, 635
BtsIMutI	CAGTG	5 cut(s)	183, 483, 493, 596, 635
Cac8I	GCNNGC	2 cut(s)	309, 397
CaiI	CAGNNNCTG	2 cut(s)	347, 419
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	345, 699
CspAI	ACCGGT	1 cut(s)	574
CviQI	GTAC	2 cut(s)	345, 699
DdeI	CTNAG	6 cut(s)	340, 372, 500, 621, 663, 705
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	579
EciI	GGCGGA	1 cut(s)	99
Eco105I	TACGTA	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	501
FaiI	YATR	6 cut(s)	185, 261, 316, 318, 434, 650
Fnu4HI	GCNGC	4 cut(s)	242, 384, 420, 423
Fsp4HI	GCNGC	4 cut(s)	242, 384, 420, 423
FspBI	CTAG	2 cut(s)	587, 654
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	4 cut(s)	242, 384, 420, 423
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	3 cut(s)	81, 575, 641
HgaI	GACGC	1 cut(s)	663
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	674
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	3 cut(s)	81, 575, 641
Hpy166II	GTNNAC	2 cut(s)	295, 491
Hpy188I	TCNGA	4 cut(s)	124, 237, 285, 532
Hpy188III	TCNNGA	2 cut(s)	158, 448
Hpy8I	GTNNAC	2 cut(s)	295, 491
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	157, 537, 555
HpyCH4III	ACNGT	3 cut(s)	178, 488, 495
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	41, 311, 323, 350, 422
HpyF10VI	GCNNNNNNNGC	8 cut(s)	329, 336, 368, 392, 401, 410, 419, 659
HpyF3I	CTNAG	6 cut(s)	340, 372, 500, 621, 663, 705
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	674
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	3 cut(s)	395, 406, 434
LweI	GCATC	3 cut(s)	50, 118, 445
MaeI	CTAG	2 cut(s)	587, 654
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	5 cut(s)	91, 111, 158, 217, 669
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	70, 534
MmeI	TCCRAC	1 cut(s)	230
MroXI	GAANNNNTTC	2 cut(s)	95, 537
MspI	CCGG	3 cut(s)	81, 575, 641
MvnI	CGCG	2 cut(s)	244, 332
MwoI	GCNNNNNNNGC	8 cut(s)	329, 336, 368, 392, 401, 410, 419, 659
NdeII	GATC	1 cut(s)	353
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PdmI	GAANNNNTTC	2 cut(s)	95, 537
PfeI	GAWTC	1 cut(s)	63
PinAI	ACCGGT	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	243, 385, 421, 424
Ppu21I	YACGTR	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	3 cut(s)	313, 352, 424
PstNI	CAGNNNCTG	2 cut(s)	347, 419
RsaI	GTAC	2 cut(s)	346, 700
RsaNI	GTAC	2 cut(s)	345, 699
SatI	GCNGC	4 cut(s)	242, 384, 420, 423
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	3 cut(s)	50, 118, 445
SfcI	CTRYAG	3 cut(s)	309, 348, 420
SgrAI	CRCCGGYG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	491
SnaBI	TACGTA	1 cut(s)	34
Sse9I	AATT	2 cut(s)	70, 534
SsiI	CCGC	2 cut(s)	84, 242
SspMI	CTAG	2 cut(s)	587, 654
TaaI	ACNGT	3 cut(s)	178, 488, 495
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	5, 466
TasI	AATT	2 cut(s)	70, 534
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	63
TscAI	CASTG	5 cut(s)	183, 483, 493, 603, 642
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	383, 419, 422
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	3 cut(s)	94, 103, 547
TspRI	CASTG	5 cut(s)	183, 483, 493, 603, 642
VpaK11BI	GGWCC	1 cut(s)	491
XmnI	GAANNNNTTC	2 cut(s)	95, 537
XspI	CTAG	2 cut(s)	587, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.