Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Reverse (-)

4938188 .. 4941270

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCAACTGCAGCACAAGCTGTGATTGCAGCAAACACATTTACATGCACATTCCCTACACAAAGGAGCTTCTTCTTTTCCAAAAGAGTTCAGAAAGTTAATCATCTCACAGTTAGAGCTTCCACTGAAGAAACTGACTGCAATGTTGAAGAATGTGCTCCTGACAAAGAGGTTGGAAAGGTCAGCGTGGAATGGTTGGCTGGTGAGAAGACAAAAGTTTCTGGGACATTTCCACCTCGCAAACGTGGTTGGACTGGATATGTTGAGAAGGACACCGCTGGCCAGACAAACATATATTCGGTTGAGCCTGCAGTTTATGTAGCAGAAAGTGTAATTAGTTCAGGAAGTGCAGGGTCTTCATCCAATGGAGCGGAGAACACAGCAGCAATCGCTGCTGGGCTTGCACTCATCTCCGTTGCTGCCGCTTCATCAATACTCCTCCAAGTAGGTAAGAACCCACCTGTGGTGCAGAAGGTAGAATACTCTGGGCCATCACTTAGTTACTATATCAACAAGTTCAAGCCACAAGAGATAATCCAAGCCTCAGTGCCAAGTGTGGTTGAATCTTCCCAGCTAGAAAGCTATGCGCCAGAACCTTCCCAGATTCAGGTTGAATCAGAGGTTCAGCTGGAACCTTCTGCTAACCGTGTCGGCAATATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

23.47

Weight (kDa)

5.19

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	371
AciI	CCGC	3 cut(s)	276, 371, 423
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	463, 607
AgsI	TTSAA	4 cut(s)	149, 520, 563, 614
AluBI	AGCT	6 cut(s)	20, 69, 119, 574, 582, 628
AluI	AGCT	6 cut(s)	20, 69, 119, 574, 582, 628
Alw21I	GWGCWC	1 cut(s)	160
AoxI	GGCC	2 cut(s)	280, 488
ApeKI	GCWGC	5 cut(s)	11, 29, 383, 392, 419
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
BbsI	GAAGAC	2 cut(s)	215, 348
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	23, 41, 379, 395, 406
BccI	CCATC	1 cut(s)	499
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	2 cut(s)	9, 309
BisI	GCNGC	6 cut(s)	12, 30, 384, 393, 420, 423
BlsI	GCNGC	6 cut(s)	13, 31, 385, 394, 421, 424
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	215, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 607
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	463, 607
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	5 cut(s)	23, 41, 379, 395, 406
BseYI	CCCAGC	2 cut(s)	395, 570
BsgI	GTGCAG	2 cut(s)	369, 488
BshFI	GGCC	2 cut(s)	282, 490
BsiHKAI	GWGCWC	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	463, 607
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	282, 490
Bsp1286I	GDGCHC	1 cut(s)	160
BspACI	CCGC	3 cut(s)	276, 371, 423
BspANI	GGCC	2 cut(s)	282, 490
BspCNI	CTCAG	1 cut(s)	557
BspLI	GGNNCC	1 cut(s)	633
BspMAI	CTGCAG	2 cut(s)	13, 313
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	112, 647
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	280, 309, 402
BstDEI	CTNAG	3 cut(s)	497, 544, 663
BstF5I	GGATG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 17, 26, 389, 392, 401
BstNSI	RCATGY	1 cut(s)	48
BstSFI	CTRYAG	2 cut(s)	9, 309
BstV1I	GCAGC	5 cut(s)	23, 41, 379, 395, 406
BstV2I	GAAGAC	2 cut(s)	215, 348
BsuRI	GGCC	2 cut(s)	282, 490
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	123, 552
Cac8I	GCNNGC	3 cut(s)	280, 309, 402
CfoI	GCGC	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	488
CviAII	CATG	1 cut(s)	45
DdeI	CTNAG	3 cut(s)	497, 544, 663
EaeI	YGGCCR	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	147
FaeI	CATG	1 cut(s)	48
FaiI	YATR	7 cut(s)	46, 261, 293, 295, 318, 507, 585
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	6 cut(s)	12, 30, 384, 393, 420, 423
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	6 cut(s)	12, 30, 384, 393, 420, 423
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	6 cut(s)	12, 30, 384, 393, 420, 423
GsaI	CCCAGC	2 cut(s)	399, 574
HaeIII	GGCC	2 cut(s)	282, 490
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HinfI	GANTC	3 cut(s)	563, 604, 614
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	93, 619
Hpy188III	TCNNGA	2 cut(s)	161, 342
HpyAV	CCTTC	4 cut(s)	262, 466, 606, 645
HpyCH4III	ACNGT	2 cut(s)	112, 647
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	8 cut(s)	11, 29, 48, 141, 311, 350, 404, 469
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 17, 26, 389, 392, 401
HpyF3I	CTNAG	3 cut(s)	497, 544, 663
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	587
LmnI	GCTCC	3 cut(s)	66, 163, 368
Lsp1109I	GCAGC	5 cut(s)	23, 41, 379, 395, 406
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	500
MbiI	CCGCTC	1 cut(s)	371
MboII	GAAGA	6 cut(s)	64, 140, 161, 220, 348, 558
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	1 cut(s)	333
MluNI	TGGCCA	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	154, 230
MnlI	CCTC	5 cut(s)	163, 246, 449, 553, 613
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	43
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	278, 628
MwoI	GCNNNNNNNGC	6 cut(s)	11, 17, 26, 389, 392, 401
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	1 cut(s)	633
NspI	RCATGY	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	563, 604, 614
PkrI	GCNGC	6 cut(s)	13, 31, 385, 394, 421, 424
PspFI	CCCAGC	2 cut(s)	395, 570
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	2 cut(s)	13, 313
PvuII	CAGCTG	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	6 cut(s)	12, 30, 384, 393, 420, 423
Sau96I	GGNCC	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	9, 309
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	3 cut(s)	276, 371, 423
SspMI	CTAG	1 cut(s)	575
TaaI	ACNGT	2 cut(s)	112, 647
TaiI	ACGT	1 cut(s)	247
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	563, 604, 614
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	130, 552
TseI	GCWGC	5 cut(s)	11, 29, 383, 392, 419
TspDTI	ATGAA	2 cut(s)	348, 417
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	2 cut(s)	130, 552
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.