Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Forward (+)

21809343 .. 21812025

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAGCCGCAGCACAAGCTCTGATTGCAGCAGCAAACACATTCACATGCACATTTCCCACACAACAAAGGAGCTTCTTCTTCTCCAGAAAACTTCATAAAGCTAATCCTCTCACAGTAGTTAGAGCTTCCACCGAAGATGGTGATTGTAATGTGGAAGAATGTGCTCCTGACAAGGAGGTTGGAAAAGTGAGCGTGGAATGGTTGGCTGGTGAGAAGACAAAACTTTCTGGGACATTTCCACCCCGCAATCGGGGTTGGACTGGATACGTTGAGAAGGACACTGCTGGACAGACAAACATATATTCTGTGGAGCCTGCAGTTTACGTAGCAGAAAGCGTGATAAGCTCAGGAACTGCAGGGTCTTCTGCCGATGGAGCTGAGAACACAGCAGCAATCACAGCTGGGGTTGCCCTCATTGCTGTTGCTGCAGCTTCATCGGTACTCCTCCAAGTAGGTAAGAACTCACCTCCGGTGGTGCAGAAGGTAGATTACTCTGGGCCATCACTTAGTTACTACATCAACAAATTCAAACCAGAGACAATCGAAGCCTTGGCGCCAAGTGTGGTTGAATCTTCCCAGCCGGAACCCTCCCAGATTCAGGTTGAGTCACAGGTTCAGCCGGAGCCTTCTGGGAGCGATGTCAGCAATATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

22.93

Weight (kDa)

4.8

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AciI	CCGC	2 cut(s)	9, 247
AcsI	RAATTY	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	252, 253, 601
AgsI	TTSAA	2 cut(s)	532, 572
AluBI	AGCT	8 cut(s)	20, 75, 104, 128, 348, 380, 404, 434
AluI	AGCT	8 cut(s)	20, 75, 104, 128, 348, 380, 404, 434
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	7 cut(s)	5, 11, 29, 32, 392, 428, 431
ApoI	RAATTY	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	155, 224, 459
BanI	GGYRCC	1 cut(s)	556
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbsI	GAAGAC	2 cut(s)	224, 357
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	7 cut(s)	17, 23, 41, 44, 404, 415, 443
BccI	CCATC	3 cut(s)	134, 368, 511
BcgI	CGANNNNNNTGC	2 cut(s)	420, 454
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	533
BfmI	CTRYAG	3 cut(s)	318, 357, 429
BfoI	RGCGCY	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	8 cut(s)	6, 9, 12, 30, 33, 393, 429, 432
BlsI	GCNGC	8 cut(s)	7, 10, 13, 31, 34, 394, 430, 433
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	4 cut(s)	315, 558, 588, 627
BpiI	GAAGAC	2 cut(s)	224, 357
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	349
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 253, 601
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	252, 253, 601
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	363, 372
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	7 cut(s)	17, 23, 41, 44, 404, 415, 443
BseYI	CCCAGC	2 cut(s)	404, 579
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	3 cut(s)	473, 584, 623
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	252, 253, 601
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	9, 247
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	2 cut(s)	362, 373
BspLI	GGNNCC	4 cut(s)	315, 558, 588, 627
BspMAI	CTGCAG	3 cut(s)	322, 361, 433
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	552
BssNI	GRCGYC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	349, 381, 509, 657
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	51
BstSFI	CTRYAG	3 cut(s)	318, 357, 429
BstSNI	TACGTA	1 cut(s)	328
BstV1I	GCAGC	7 cut(s)	17, 23, 41, 44, 404, 415, 443
BstV2I	GAAGAC	2 cut(s)	224, 357
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	502
BtgZI	GCGATG	1 cut(s)	654
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	1 cut(s)	48
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	4 cut(s)	349, 381, 509, 657
DinI	GGCGCC	1 cut(s)	558
Eco105I	TACGTA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	1 cut(s)	51
FaiI	YATR	4 cut(s)	49, 99, 302, 304
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	47
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 30, 33, 393, 429, 432
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 30, 33, 393, 429, 432
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	8 cut(s)	6, 9, 12, 30, 33, 393, 429, 432
GsaI	CCCAGC	2 cut(s)	408, 583
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	3 cut(s)	473, 584, 623
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HinfI	GANTC	3 cut(s)	572, 598, 608
HpaII	CCGG	3 cut(s)	473, 584, 623
HphI	GGTGA	3 cut(s)	155, 224, 459
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	3 cut(s)	87, 170, 351
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	271, 478, 639
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	270, 327
HpyCH4V	TGCA	6 cut(s)	29, 51, 320, 359, 431, 481
HpyF3I	CTNAG	4 cut(s)	349, 381, 509, 657
HpySE526I	ACGT	2 cut(s)	270, 327
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	557
KasI	GGCGCC	1 cut(s)	556
LmnI	GCTCC	6 cut(s)	72, 172, 313, 377, 625, 636
Lsp1109I	GCAGC	7 cut(s)	17, 23, 41, 44, 404, 415, 443
MaeII	ACGT	2 cut(s)	270, 327
MaeIII	GTNAC	2 cut(s)	512, 609
MboII	GAAGA	7 cut(s)	70, 73, 149, 170, 229, 357, 567
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	527
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	2 cut(s)	163, 239
MnlI	CCTC	6 cut(s)	120, 172, 425, 458, 480, 601
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	473, 584, 623
NarI	GGCGCC	1 cut(s)	557
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	4 cut(s)	315, 558, 588, 627
NmuCI	GTSAC	1 cut(s)	609
NspI	RCATGY	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	572, 598
PkrI	GCNGC	8 cut(s)	7, 10, 13, 31, 34, 394, 430, 433
PleI	GAGTC	1 cut(s)	616
PluTI	GGCGCC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	616
Ppu21I	YACGTR	1 cut(s)	328
PspFI	CCCAGC	2 cut(s)	404, 579
PspN4I	GGNNCC	4 cut(s)	315, 558, 588, 627
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	3 cut(s)	322, 361, 433
PstNI	CAGNNNCTG	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	46
SatI	GCNGC	8 cut(s)	6, 9, 12, 30, 33, 393, 429, 432
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	169
SfcI	CTRYAG	3 cut(s)	318, 357, 429
SfoI	GGCGCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	46
SnaBI	TACGTA	1 cut(s)	328
Sse9I	AATT	1 cut(s)	527
SsiI	CCGC	2 cut(s)	9, 247
SspDI	GGCGCC	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	2 cut(s)	273, 330
TaqI	TCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	527
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	572, 598
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	7 cut(s)	5, 11, 29, 32, 392, 428, 431
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	2 cut(s)	86, 426
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.