Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Forward (+)

11320034 .. 11324462

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTCCTCCCAGTATTCTCGGTCCTCCGGAGTTCCACAAACCCTCACCCACCACCACCGCTCCGCCGCCATCCCAACCCAAATCCAAACCCACCACCGGCGAACCCTTCGTGGACCTGATGGTGGCGAATTTCAACGACGTCGGAACCAAGCATGACCTCCCAATGGGCCTGACGGAGAACAACTCTGCCATGTTTCTCTCCACCGGCAACCTCTGCCTCGATCTCTTCTTCCACGTCATCCCGAACACTCCAGGCGACTACCTCACCGATGGGACTCCAATGGTAGCCAGTGTCGTGTCATTGGCTTCTTCCTTTATCGCAGTCACTTTATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.87

Weight (kDa)

4.72

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	3 cut(s)	60, 65, 68
AcsI	RAATTY	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	98, 124, 166
AgsI	TTSAA	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	23, 115, 169
AsuHPI	GGTGA	2 cut(s)	39, 259
AvaII	GGWCC	2 cut(s)	23, 115
BccI	CCATC	3 cut(s)	79, 115, 266
BciT130I	CCWGG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	23, 115
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	23, 115, 169
BmiI	GGNNCC	2 cut(s)	6, 148
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 124, 166
Bse118I	RCCGGY	2 cut(s)	98, 206
Bse1I	ACTGG	2 cut(s)	12, 291
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	71, 240
BseLI	CCNNNNNNNGG	3 cut(s)	98, 124, 166
BseNI	ACTGG	2 cut(s)	12, 291
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	29, 99, 207
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	98, 124, 166
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	60, 65, 68
BspANI	GGCC	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	6, 148
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	98, 206
BsrI	ACTGG	2 cut(s)	12, 291
BssAI	RCCGGY	2 cut(s)	98, 206
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	71, 240
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	71, 240
BtsIMutI	CAGTG	1 cut(s)	298
Cfr10I	RCCGGY	2 cut(s)	98, 206
Cfr13I	GGNCC	3 cut(s)	23, 115, 169
CviAII	CATG	2 cut(s)	155, 193
CviJI	RGCY	4 cut(s)	5, 171, 290, 308
CviKI_1	RGCY	4 cut(s)	5, 171, 290, 308
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	23, 115
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	158, 196
FaiI	YATR	2 cut(s)	156, 194
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	2 cut(s)	154, 192
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	58, 227
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	3 cut(s)	29, 99, 207
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	158, 196
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	29, 99, 207
HphI	GGTGA	2 cut(s)	39, 259
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	3 cut(s)	29, 244, 339
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	143, 146
HpyAV	CCTTC	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	141, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	141, 237
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	158, 196
Kpn2I	TCCGGA	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	10, 67
LpnPI	CCDG	9 cut(s)	25, 42, 112, 131, 185, 220, 240, 267, 304
MaeII	ACGT	2 cut(s)	141, 237
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	225
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	220, 223, 303, 327
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	7 cut(s)	18, 36, 55, 170, 224, 230, 275
MroI	TCCGGA	1 cut(s)	28
MspI	CCGG	3 cut(s)	29, 99, 207
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	158, 196
NlaIV	GGNNCC	2 cut(s)	6, 148
NmuCI	GTSAC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	6, 148
PspPI	GGNCC	3 cut(s)	23, 115, 169
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	23, 115, 169
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	6 cut(s)	120, 144, 162, 216, 240, 267
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	23, 115
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	60, 65, 68
StyD4I	CCNGG	1 cut(s)	253
TaiI	ACGT	2 cut(s)	144, 240
TaqI	TCGA	1 cut(s)	222
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	70
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	23, 115
XapI	RAATTY	1 cut(s)	130
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.