Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Forward (+)

52769124 .. 52771728

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAAGTGCAGCCCATGCTGTGATGGCAGCAAACACGTTTACTCGCACATTCCCTACACAAAACACCTTCTTCTTCTCCAAAAGACATCACAAGATTAATCATCTCACCATCAGAGCTTCCACTGAAGACGCTGACTGTAATGTCGAAGAATGTGCTCCTGAAAAGGAGGTCGGAAAGGTCAGCGTGGAGTGGTTGGCTGGTGAGAAGACAAAAGTAGCAGGGACATTTCCTCCCCGTAAGACTCGGGGTTGGACTGGATATGTTGAGAAGGACACGGCTGGGCAGACAAATATATACTCTGTGGAGCCTGCAGTTTATGTAGCAGAAAGCGGAATAAGTTCAGGAAATGCAGGTTCTTCTTCTGATGGAGCTGAGAACACAGCAGCAATAGCTGCTGGACTTGCCCTCATCTCTATCGCTGCAGCTTCCTCCATACTCCTCCAAGTAGGTAAGAACCCACCACAGATTCAGAAAGTAGAATACTCTGGGCCATCACTTAGTTACTACATCAACAAGTTCAAGCCACAAGAGATAATACAAGCCTCAGCGCCAAGTGTGATTGAATCGTCCTCAACAATTCAGCCAGAAAGCTTAGCGCCAGAACCTTCCCAGGTTAAGGTTGACTCAGAAGTTCAGCTGGAGCCTTCTGCTTACGGTGGCAGCACTATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

23.8

Weight (kDa)

5.43

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	344
AciI	CCGC	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	523, 566
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	6 cut(s)	119, 374, 395, 428, 594, 640
AluI	AGCT	6 cut(s)	119, 374, 395, 428, 594, 640
Alw21I	GWGCWC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	7 cut(s)	11, 29, 386, 395, 422, 425, 663
AseI	ATTAAT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	553, 601
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	100, 215
AvaI	CYCGRG	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	135, 215
Bbv12I	GWGCWC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	547
BbvI	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
BccI	CCATC	4 cut(s)	19, 119, 362, 502
BceAI	ACGGC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	614
BfmI	CTRYAG	2 cut(s)	312, 423
BfoI	RGCGCY	2 cut(s)	554, 602
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
BlpI	GCTNAGC	1 cut(s)	595
BlsI	GCNGC	7 cut(s)	13, 31, 388, 397, 424, 427, 665
Bme1390I	CCNGG	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	309, 645
BmrFI	CCNGG	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	135, 215
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	547
Bpu1102I	GCTNAGC	1 cut(s)	595
BsaJI	CCNNGG	1 cut(s)	612
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMII	CTCAG	3 cut(s)	366, 561, 642
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1720I	GCTNAGC	1 cut(s)	595
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	3 cut(s)	367, 560, 641
BspLI	GGNNCC	2 cut(s)	309, 645
BspMAI	CTGCAG	2 cut(s)	316, 427
BspMI	ACCTGC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	140, 659
BstAPI	GCANNNNNTGC	2 cut(s)	17, 395
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	6 cut(s)	375, 500, 547, 595, 628, 675
BstH2I	RGCGCY	2 cut(s)	554, 602
BstHHI	GCGC	2 cut(s)	553, 601
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 17, 26, 392, 395, 404
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	2 cut(s)	312, 423
BstV1I	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
BstV2I	GAAGAC	2 cut(s)	135, 215
BsuRI	GGCC	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	2 cut(s)	553, 601
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	140
CviAII	CATG	1 cut(s)	17
DdeI	CTNAG	6 cut(s)	375, 500, 547, 595, 628, 675
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	1 cut(s)	20
FaiI	YATR	6 cut(s)	18, 264, 296, 298, 321, 437
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
Fsp4HI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
GlaI	GCGC	2 cut(s)	552, 600
GluI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	662
HaeII	RGCGCY	2 cut(s)	554, 602
HaeIII	GGCC	1 cut(s)	493
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	553, 601
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	551, 599
HinP1I	GCGC	2 cut(s)	551, 599
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	4 cut(s)	244, 469, 566, 626
HphI	GGTGA	2 cut(s)	100, 215
Hpy166II	GTNNAC	2 cut(s)	42, 625
Hpy188I	TCNGA	5 cut(s)	116, 176, 367, 474, 631
Hpy188III	TCNNGA	2 cut(s)	161, 345
Hpy8I	GTNNAC	2 cut(s)	42, 625
HpyAV	CCTTC	4 cut(s)	79, 265, 618, 657
HpyCH4III	ACNGT	2 cut(s)	140, 659
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	11, 314, 353, 425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 17, 26, 392, 395, 404
HpyF3I	CTNAG	6 cut(s)	375, 500, 547, 595, 628, 675
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	551, 599
LmnI	GCTCC	4 cut(s)	163, 307, 371, 643
Lsp1109I	GCAGC	6 cut(s)	23, 41, 382, 398, 409, 437
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	503
MboII	GAAGA	7 cut(s)	64, 67, 140, 161, 220, 351, 354
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	238, 620
MmeI	TCCRAC	2 cut(s)	154, 233
MnlI	CCTC	7 cut(s)	163, 243, 419, 442, 452, 556, 583
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	2 cut(s)	99, 618
MspA1I	CMGCKG	1 cut(s)	640
MspR9I	CCNGG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	6 cut(s)	11, 17, 26, 392, 395, 404
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	309, 645
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	469, 566
PkrI	GCNGC	7 cut(s)	13, 31, 388, 397, 424, 427, 665
PleI	GAGTC	2 cut(s)	238, 620
PpsI	GAGTC	2 cut(s)	238, 620
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	309, 645
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	2 cut(s)	316, 427
PvuII	CAGCTG	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	99, 618
SatI	GCNGC	7 cut(s)	12, 30, 387, 396, 423, 426, 664
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	2 cut(s)	238, 620
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	160
SfcI	CTRYAG	2 cut(s)	312, 423
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	140, 659
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	469, 566
Tru1I	TTAA	2 cut(s)	99, 618
Tru9I	TTAA	2 cut(s)	99, 618
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	7 cut(s)	11, 29, 386, 395, 422, 425, 663
TspRI	CASTG	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.