Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Reverse (-)

33425276 .. 33428285

Gene Structure 3010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1152600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAGCCGCAGCACAAGCTCTGATTGCAGCAGCAAACACATTCACGTGCACATTTCCTACACAACAAAGGAGCTTCTTCTTCTCCAGAAAACTTCATAAAGCTAATCATCTCACTGTAGTTAGAGCTTCCACTGAAGATGCTGACTGTAATGTGGAAGAATGTGCTCCCGACAAGGAGGTTGGAAAAGTGAGCGTGGAATGGTTGGCTGGTGAGAAGACAAAAATTTCTGGGACATTTCCACCCCGCAATCGGGGTTGGACTGGATACGTTGAGAAGGACACTGCTGGACAGACAAACATATATTCTGTGGAGCCTGCAGTTTACGTAGCAGAAAGCGTGATAAGCTCAGGAACTGCAGGGTCTTCTGCCGATGGAGCTGAGAACACAGCAGCAATCGCAGCTGGGATTGCCCTCATTGCTGTTGCTGCAGCTTCATCAATACTCCTCCAAGTAGGTAAGAACTCACCTCCGGTGGTGCAGAAGGTAGATTACTCTGGGCCATCACTTAGTTACTACATCAACAAGTTCAAACCAGAGACAATCGAAGCCTTGGCGCCAAGTGTGGTTGAATCTTCCCAGCCTGAACCCTCCCAGATTCAGGTTGAGTCAGAGATTCAGCCGGAGCCTTCTGCGAGCGAAGTCAGCAATATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.03

Weight (kDa)

4.84

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AciI	CCGC	2 cut(s)	9, 247
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	252, 253, 601
AgsI	TTSAA	2 cut(s)	532, 572
AluBI	AGCT	8 cut(s)	20, 75, 104, 128, 348, 380, 404, 434
AluI	AGCT	8 cut(s)	20, 75, 104, 128, 348, 380, 404, 434
Alw21I	GWGCWC	2 cut(s)	53, 169
Alw26I	GTCTC	1 cut(s)	533
Alw44I	GTGCAC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	500
ApaLI	GTGCAC	1 cut(s)	49
ApeKI	GCWGC	8 cut(s)	5, 11, 29, 32, 392, 401, 428, 431
ApoI	RAATTY	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	224, 459
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	556
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbrPI	CACGTG	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	224, 357
Bbv12I	GWGCWC	2 cut(s)	53, 169
BbvI	GCAGC	8 cut(s)	17, 23, 41, 44, 404, 413, 415, 443
BccI	CCATC	2 cut(s)	368, 511
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	533
BfmI	CTRYAG	4 cut(s)	117, 318, 357, 429
BfoI	RGCGCY	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	9 cut(s)	6, 9, 12, 30, 33, 393, 402, 429, 432
BlsI	GCNGC	9 cut(s)	7, 10, 13, 31, 34, 394, 403, 430, 433
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	315, 558, 627
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	2 cut(s)	224, 357
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	349
BsaAI	YACGTR	2 cut(s)	48, 328
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 253, 601
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	552
BseLI	CCNNNNNNNGG	3 cut(s)	252, 253, 601
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	363, 372
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	8 cut(s)	17, 23, 41, 44, 404, 413, 415, 443
BseYI	CCCAGC	2 cut(s)	404, 579
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	2 cut(s)	53, 169
BsiSI	CCGG	2 cut(s)	473, 623
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	252, 253, 601
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	53, 169
BspACI	CCGC	2 cut(s)	9, 247
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	2 cut(s)	362, 373
BspLI	GGNNCC	3 cut(s)	315, 558, 627
BspMAI	CTGCAG	3 cut(s)	322, 361, 433
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	552
BssNI	GRCGYC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	118, 149
BstACI	GRCGYC	1 cut(s)	557
BstBAI	YACGTR	2 cut(s)	48, 328
BstC8I	GCNNGC	2 cut(s)	318, 637
BstDEI	CTNAG	4 cut(s)	349, 381, 509, 657
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	533
BstSFI	CTRYAG	4 cut(s)	117, 318, 357, 429
BstSLI	GKGCMC	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	328
BstV1I	GCAGC	8 cut(s)	17, 23, 41, 44, 404, 413, 415, 443
BstV2I	GAAGAC	2 cut(s)	224, 357
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	114, 132, 282
Cac8I	GCNNGC	2 cut(s)	318, 637
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	500
DdeI	CTNAG	4 cut(s)	349, 381, 509, 657
DinI	GGCGCC	1 cut(s)	558
Eco105I	TACGTA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	156
Eco72I	CACGTG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	552
FaiI	YATR	3 cut(s)	99, 302, 304
FaqI	GGGAC	1 cut(s)	247
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	9 cut(s)	6, 9, 12, 30, 33, 393, 402, 429, 432
Fsp4HI	GCNGC	9 cut(s)	6, 9, 12, 30, 33, 393, 402, 429, 432
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	9 cut(s)	6, 9, 12, 30, 33, 393, 402, 429, 432
GsaI	CCCAGC	2 cut(s)	408, 583
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	2 cut(s)	473, 623
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	557
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HinfI	GANTC	4 cut(s)	572, 598, 608, 616
HpaII	CCGG	2 cut(s)	473, 623
HphI	GGTGA	2 cut(s)	224, 459
Hpy166II	GTNNAC	2 cut(s)	51, 325
Hpy188I	TCNGA	2 cut(s)	24, 613
Hpy188III	TCNNGA	3 cut(s)	87, 170, 351
Hpy8I	GTNNAC	2 cut(s)	51, 325
HpyAV	CCTTC	3 cut(s)	271, 478, 639
HpyCH4III	ACNGT	2 cut(s)	118, 149
HpyCH4IV	ACGT	3 cut(s)	47, 270, 327
HpyCH4V	TGCA	6 cut(s)	29, 51, 320, 359, 431, 481
HpyF3I	CTNAG	4 cut(s)	349, 381, 509, 657
HpySE526I	ACGT	3 cut(s)	47, 270, 327
Hsp92I	GRCGYC	1 cut(s)	557
HspAI	GCGC	1 cut(s)	557
KasI	GGCGCC	1 cut(s)	556
LmnI	GCTCC	5 cut(s)	72, 172, 313, 377, 625
Lsp1109I	GCAGC	8 cut(s)	17, 23, 41, 44, 404, 413, 415, 443
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	3 cut(s)	47, 270, 327
MaeIII	GTNAC	1 cut(s)	512
MboII	GAAGA	7 cut(s)	70, 73, 149, 170, 229, 357, 567
MhlI	GDGCHC	2 cut(s)	53, 169
MluCI	AATT	1 cut(s)	225
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	2 cut(s)	163, 239
MnlI	CCTC	5 cut(s)	172, 425, 458, 480, 601
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	473, 623
NarI	GGCGCC	1 cut(s)	557
NlaIV	GGNNCC	3 cut(s)	315, 558, 627
PfeI	GAWTC	3 cut(s)	572, 598, 616
PkrI	GCNGC	9 cut(s)	7, 10, 13, 31, 34, 394, 403, 430, 433
PleI	GAGTC	1 cut(s)	616
PluTI	GGCGCC	1 cut(s)	560
PmaCI	CACGTG	1 cut(s)	48
PmlI	CACGTG	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	616
Ppu21I	YACGTR	2 cut(s)	48, 328
PspCI	CACGTG	1 cut(s)	48
PspFI	CCCAGC	2 cut(s)	404, 579
PspN4I	GGNNCC	3 cut(s)	315, 558, 627
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	3 cut(s)	322, 361, 433
PstNI	CAGNNNCTG	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	46
SatI	GCNGC	9 cut(s)	6, 9, 12, 30, 33, 393, 402, 429, 432
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	2 cut(s)	53, 169
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	4 cut(s)	117, 318, 357, 429
SfoI	GGCGCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	46
SnaBI	TACGTA	1 cut(s)	328
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	9, 247
SspDI	GGCGCC	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	118, 149
TaiI	ACGT	3 cut(s)	50, 273, 330
TaqI	TCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	225
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	572, 598, 616
TscAI	CASTG	3 cut(s)	121, 139, 289
TseI	GCWGC	8 cut(s)	5, 11, 29, 32, 392, 401, 428, 431
TspDTI	ATGAA	2 cut(s)	86, 426
TspRI	CASTG	3 cut(s)	121, 139, 289
VneI	GTGCAC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.