Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012405

Physical Location & Seq

Genomic Coordinates Forward (+)

2573614 .. 2575874

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCAACAGCAGCACAGGCTGTGATTGCAGCAGCAAACACATTCACATGCACATTTCCTACACAAAGGAGCTTCTTCTTCTCCAGAAAACTTCAGAAAGTTAACCATCTCGCTCTGGTTAGAGCTTCCACTGAAGATGCTGACTGTAATGTGGAAGAATGTGCTCCTGACAAGGAGGTTGGAAAAGTGAGCGTGGAATGGTTGGCTGGTGAGAAGACAAAAATTTCTGGGACGTTTCCACCCCGCAATCGGGGTTGGACTGGATACGTTGAGAAGGACACTGCTGGACAGACAAACATATATTCTGTGGAGCCTGCAGTTTACGTAGCAGAAAGCGTAATAAGCTCTGGAACTGCAGGGTCTTCTGCCGATGGAGCTGAGAACACAGCAGCAATCACAGCTGGGGTTGCCCTCGTTGCTGTTGCTGCAGCTTCATCAATACTCCTCCAAGTAGGTAAGAACTCGCCTCCGGTTGTGCAGAAGGTAGATTACTCTGGGCCATCACTTAGTTACTATATCAACAAGTTCAAACCAGAGACAACCGAAGCCTCGGCGCCAAGTGTGGTTGAATCTTCTCAGCCGGAACCCTCCCAGATTCAGGTTGAATCAGAGGTTCAGCAGGAGCTTTCACCGAGTGATGTCAGCAATATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0061635 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

22.93

Weight (kDa)

4.74

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07020
fragaria_vesca	FvH4_7g03940
malus_domestica	MD00G1152600.v1.1 MD07G1043600.v1.1
prunus_persica	Prupe.2G044200_v2.0.a1
pyrus_communis	pycom02g23650 pycom07g03100
rosa_chinensis	RchiOBHm_Chr1g0327631
rosa_laevigata	RLG00000029978
rosa_multiflora	Rmu_co8173982.1_g000001
rosa_roxburghii	Rroxscaffold_4G00322500
rosa_rugosa	Rorug01G0069000
rosa_samantha	Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000
rosa_wichuraiana	Rw1G006710 Rw1G006720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	2 cut(s)	77, 153
AcyI	GRCGYC	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	635
AfiI	CCNNNNNNNGG	3 cut(s)	249, 250, 598
AgsI	TTSAA	3 cut(s)	529, 569, 605
AluBI	AGCT	7 cut(s)	72, 125, 345, 377, 401, 431, 625
AluI	AGCT	7 cut(s)	72, 125, 345, 377, 401, 431, 625
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	530
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	6 cut(s)	11, 29, 32, 389, 425, 428
ApoI	RAATTY	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	221, 621
BanI	GGYRCC	1 cut(s)	553
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BbsI	GAAGAC	2 cut(s)	221, 354
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	6 cut(s)	23, 41, 44, 401, 412, 440
BccI	CCATC	3 cut(s)	114, 365, 508
BciVI	GTATCC	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	530
BfmI	CTRYAG	3 cut(s)	315, 354, 426
BfoI	RGCGCY	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	6 cut(s)	12, 30, 33, 390, 426, 429
BlsI	GCNGC	6 cut(s)	13, 31, 34, 391, 427, 430
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	3 cut(s)	312, 555, 585
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	221, 354
BpmI	CTGGAG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 250, 598
Bse1I	ACTGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	249, 250, 598
BseMII	CTCAG	2 cut(s)	369, 590
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	6 cut(s)	23, 41, 44, 401, 412, 440
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	499
BshNI	GGYRCC	1 cut(s)	553
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	470, 581
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	249, 250, 598
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	2 cut(s)	370, 589
BspLI	GGNNCC	3 cut(s)	312, 555, 585
BspMAI	CTGCAG	3 cut(s)	319, 358, 430
BspT107I	GGYRCC	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	549
BssNI	GRCGYC	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	4 cut(s)	378, 506, 576, 654
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 26, 342, 374, 398, 407, 416, 425
BstNSI	RCATGY	1 cut(s)	51
BstSFI	CTRYAG	3 cut(s)	315, 354, 426
BstSNI	TACGTA	1 cut(s)	325
BstV1I	GCAGC	6 cut(s)	23, 41, 44, 401, 412, 440
BstV2I	GAAGAC	2 cut(s)	221, 354
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	129, 279
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	497
CviAII	CATG	1 cut(s)	48
DdeI	CTNAG	4 cut(s)	378, 506, 576, 654
DinI	GGCGCC	1 cut(s)	555
DraIII	CACNNNGTG	1 cut(s)	635
Eco105I	TACGTA	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	77, 153
EgeI	GGCGCC	1 cut(s)	555
EheI	GGCGCC	1 cut(s)	555
FaeI	CATG	1 cut(s)	51
FaiI	YATR	4 cut(s)	49, 299, 301, 516
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	47
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	6 cut(s)	12, 30, 33, 390, 426, 429
Fsp4HI	GCNGC	6 cut(s)	12, 30, 33, 390, 426, 429
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	6 cut(s)	12, 30, 33, 390, 426, 429
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	2 cut(s)	470, 581
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	3 cut(s)	569, 595, 605
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	470, 581
HphI	GGTGA	2 cut(s)	221, 621
Hpy166II	GTNNAC	2 cut(s)	103, 322
Hpy188I	TCNGA	2 cut(s)	96, 610
Hpy188III	TCNNGA	3 cut(s)	84, 167, 348
Hpy8I	GTNNAC	2 cut(s)	103, 322
HpyAV	CCTTC	2 cut(s)	268, 475
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	3 cut(s)	233, 267, 324
HpyCH4V	TGCA	6 cut(s)	29, 51, 317, 356, 428, 478
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 26, 342, 374, 398, 407, 416, 425
HpyF3I	CTNAG	4 cut(s)	378, 506, 576, 654
HpySE526I	ACGT	3 cut(s)	233, 267, 324
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	554
KasI	GGCGCC	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	103
LmnI	GCTCC	5 cut(s)	69, 169, 310, 374, 622
Lsp1109I	GCAGC	6 cut(s)	23, 41, 44, 401, 412, 440
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	3 cut(s)	233, 267, 324
MaeIII	GTNAC	1 cut(s)	509
MboII	GAAGA	7 cut(s)	67, 70, 146, 167, 226, 354, 564
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	554
MmeI	TCCRAC	2 cut(s)	160, 236
MnlI	CCTC	7 cut(s)	169, 422, 455, 477, 559, 598, 604
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	2 cut(s)	470, 581
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 26, 342, 374, 398, 407, 416, 425
NarI	GGCGCC	1 cut(s)	554
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	3 cut(s)	312, 555, 585
NmeAIII	GCCGAG	1 cut(s)	530
NspI	RCATGY	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	569, 595, 605
PkrI	GCNGC	6 cut(s)	13, 31, 34, 391, 427, 430
PluTI	GGCGCC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	312, 555, 585
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	3 cut(s)	319, 358, 430
PvuII	CAGCTG	1 cut(s)	401
RseI	CAYNNNNRTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	6 cut(s)	12, 30, 33, 390, 426, 429
Sau96I	GGNCC	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	3 cut(s)	315, 354, 426
SfoI	GGCGCC	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	46
SnaBI	TACGTA	1 cut(s)	325
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	244
SspDI	GGCGCC	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	3 cut(s)	236, 270, 327
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	569, 595, 605
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	136, 286
TseI	GCWGC	6 cut(s)	11, 29, 32, 389, 425, 428
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	136, 286
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.