Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07020 |
| fragaria_vesca | FvH4_7g03940 |
| malus_domestica | MD00G1152600.v1.1 MD07G1043600.v1.1 |
| prunus_persica | Prupe.2G044200_v2.0.a1 |
| pyrus_communis | pycom02g23650 pycom07g03100 |
| rosa_chinensis | RchiOBHm_Chr1g0327631 |
| rosa_laevigata | RLG00000029978 |
| rosa_multiflora | Rmu_co8173982.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00322500 |
| rosa_rugosa | Rorug01G0069000 |
| rosa_samantha | Rh1AG086100 Rh1BG068700 Rh1CG083600 Rh1DG090200 Rh2CG317000 |
| rosa_wichuraiana | Rw1G006710 Rw1G006720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 353 |
| AccB1I | GGYRCC | 2 cut(s) | 562, 655 |
| AciI | CCGC | 1 cut(s) | 288 |
| AcyI | GRCGYC | 2 cut(s) | 141, 563 |
| AgsI | TTSAA | 2 cut(s) | 535, 638 |
| AjnI | CCWGG | 1 cut(s) | 598 |
| AluBI | AGCT | 6 cut(s) | 128, 351, 404, 437, 606, 634 |
| AluI | AGCT | 6 cut(s) | 128, 351, 404, 437, 606, 634 |
| Alw21I | GWGCWC | 1 cut(s) | 169 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| AoxI | GGCC | 1 cut(s) | 503 |
| ApeKI | GCWGC | 4 cut(s) | 32, 395, 431, 434 |
| AspLEI | GCGC | 1 cut(s) | 565 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 2 cut(s) | 224, 465 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 210, 243 |
| BanI | GGYRCC | 2 cut(s) | 562, 655 |
| BbsI | GAAGAC | 2 cut(s) | 74, 224 |
| Bbv12I | GWGCWC | 1 cut(s) | 169 |
| BbvI | GCAGC | 4 cut(s) | 44, 407, 418, 446 |
| BccI | CCATC | 2 cut(s) | 371, 514 |
| BciT130I | CCWGG | 1 cut(s) | 600 |
| BfmI | CTRYAG | 3 cut(s) | 12, 321, 432 |
| BfoI | RGCGCY | 1 cut(s) | 566 |
| BfuAI | ACCTGC | 1 cut(s) | 353 |
| BisI | GCNGC | 4 cut(s) | 33, 396, 432, 435 |
| BlsI | GCNGC | 4 cut(s) | 34, 397, 433, 436 |
| Bme1390I | CCNGG | 1 cut(s) | 600 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 3 cut(s) | 318, 564, 657 |
| BmrFI | CCNGG | 1 cut(s) | 600 |
| BpiI | GAAGAC | 2 cut(s) | 74, 224 |
| Bpu10I | CCTNAGC | 1 cut(s) | 352 |
| BsaHI | GRCGYC | 2 cut(s) | 141, 563 |
| BsaJI | CCNNGG | 2 cut(s) | 558, 624 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 226, 256 |
| Bse118I | RCCGGY | 1 cut(s) | 652 |
| Bse1I | ACTGG | 1 cut(s) | 271 |
| BseBI | CCWGG | 1 cut(s) | 600 |
| BseDI | CCNNGG | 2 cut(s) | 558, 624 |
| BseGI | GGATG | 1 cut(s) | 581 |
| BseMII | CTCAG | 2 cut(s) | 136, 366 |
| BseNI | ACTGG | 1 cut(s) | 271 |
| BseXI | GCAGC | 4 cut(s) | 44, 407, 418, 446 |
| BsgI | GTGCAG | 1 cut(s) | 381 |
| BshFI | GGCC | 1 cut(s) | 505 |
| BshNI | GGYRCC | 2 cut(s) | 562, 655 |
| BsiHKAI | GWGCWC | 1 cut(s) | 169 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 653 |
| BslFI | GGGAC | 1 cut(s) | 247 |
| BsmFI | GGGAC | 1 cut(s) | 247 |
| BsnI | GGCC | 1 cut(s) | 505 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 169 |
| BspACI | CCGC | 1 cut(s) | 288 |
| BspANI | GGCC | 1 cut(s) | 505 |
| BspCNI | CTCAG | 2 cut(s) | 135, 365 |
| BspLI | GGNNCC | 3 cut(s) | 318, 564, 657 |
| BspMAI | CTGCAG | 2 cut(s) | 325, 436 |
| BspMI | ACCTGC | 1 cut(s) | 353 |
| BspT107I | GGYRCC | 2 cut(s) | 562, 655 |
| BsrFI | RCCGGY | 1 cut(s) | 652 |
| BsrI | ACTGG | 1 cut(s) | 271 |
| BssAI | RCCGGY | 1 cut(s) | 652 |
| BssECI | CCNNGG | 2 cut(s) | 558, 624 |
| BssNI | GRCGYC | 2 cut(s) | 141, 563 |
| Bst2UI | CCWGG | 1 cut(s) | 600 |
| Bst4CI | ACNGT | 2 cut(s) | 149, 592 |
| Bst6I | CTCTTC | 1 cut(s) | 455 |
| BstACI | GRCGYC | 2 cut(s) | 141, 563 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 4 cut(s) | 122, 352, 512, 687 |
| BstF5I | GGATG | 1 cut(s) | 581 |
| BstH2I | RGCGCY | 1 cut(s) | 566 |
| BstHHI | GCGC | 1 cut(s) | 565 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 29, 348, 401 |
| BstNI | CCWGG | 1 cut(s) | 600 |
| BstSCI | CCNGG | 1 cut(s) | 598 |
| BstSFI | CTRYAG | 3 cut(s) | 12, 321, 432 |
| BstV1I | GCAGC | 4 cut(s) | 44, 407, 418, 446 |
| BstV2I | GAAGAC | 2 cut(s) | 74, 224 |
| BsuRI | GGCC | 1 cut(s) | 505 |
| BtsCI | GGATG | 1 cut(s) | 581 |
| BveI | ACCTGC | 1 cut(s) | 353 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CfoI | GCGC | 1 cut(s) | 565 |
| Cfr10I | RCCGGY | 1 cut(s) | 652 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| CseI | GACGC | 1 cut(s) | 149 |
| CviAII | CATG | 1 cut(s) | 20 |
| DdeI | CTNAG | 4 cut(s) | 122, 352, 512, 687 |
| DinI | GGCGCC | 1 cut(s) | 564 |
| Eam1104I | CTCTTC | 1 cut(s) | 455 |
| EarI | CTCTTC | 1 cut(s) | 455 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoRII | CCWGG | 1 cut(s) | 598 |
| EgeI | GGCGCC | 1 cut(s) | 564 |
| EheI | GGCGCC | 1 cut(s) | 564 |
| FaeI | CATG | 1 cut(s) | 23 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 59, 91 |
| FaqI | GGGAC | 1 cut(s) | 247 |
| FatI | CATG | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 4 cut(s) | 33, 396, 432, 435 |
| FokI | GGATG | 1 cut(s) | 568 |
| Fsp4HI | GCNGC | 4 cut(s) | 33, 396, 432, 435 |
| GlaI | GCGC | 1 cut(s) | 564 |
| GluI | GCNGC | 4 cut(s) | 33, 396, 432, 435 |
| HaeII | RGCGCY | 1 cut(s) | 566 |
| HaeIII | GGCC | 1 cut(s) | 505 |
| HapII | CCGG | 1 cut(s) | 653 |
| HgaI | GACGC | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 565 |
| Hin1I | GRCGYC | 2 cut(s) | 141, 563 |
| Hin1II | CATG | 1 cut(s) | 23 |
| Hin6I | GCGC | 1 cut(s) | 563 |
| HinP1I | GCGC | 1 cut(s) | 563 |
| HinfI | GANTC | 3 cut(s) | 481, 578, 638 |
| HpaII | CCGG | 1 cut(s) | 653 |
| HphI | GGTGA | 2 cut(s) | 224, 465 |
| Hpy188I | TCNGA | 7 cut(s) | 125, 136, 185, 376, 486, 625, 643 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 354 |
| HpyAV | CCTTC | 4 cut(s) | 85, 274, 630, 669 |
| HpyCH4III | ACNGT | 2 cut(s) | 149, 592 |
| HpyCH4V | TGCA | 3 cut(s) | 323, 362, 434 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 29, 348, 401 |
| HpyF3I | CTNAG | 4 cut(s) | 122, 352, 512, 687 |
| Hsp92I | GRCGYC | 2 cut(s) | 141, 563 |
| Hsp92II | CATG | 1 cut(s) | 23 |
| HspAI | GCGC | 1 cut(s) | 563 |
| KasI | GGCGCC | 1 cut(s) | 562 |
| LmnI | GCTCC | 2 cut(s) | 172, 316 |
| Lsp1109I | GCAGC | 4 cut(s) | 44, 407, 418, 446 |
| MaeIII | GTNAC | 1 cut(s) | 515 |
| MboII | GAAGA | 8 cut(s) | 70, 73, 79, 170, 229, 360, 363, 442 |
| MhlI | GDGCHC | 1 cut(s) | 169 |
| MluCI | AATT | 1 cut(s) | 469 |
| Mly113I | GGCGCC | 1 cut(s) | 563 |
| MmeI | TCCRAC | 2 cut(s) | 163, 242 |
| MnlI | CCTC | 7 cut(s) | 142, 172, 252, 451, 568, 595, 619 |
| MspI | CCGG | 1 cut(s) | 653 |
| MspR9I | CCNGG | 1 cut(s) | 600 |
| MvaI | CCWGG | 1 cut(s) | 600 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 29, 348, 401 |
| NarI | GGCGCC | 1 cut(s) | 563 |
| NlaIII | CATG | 1 cut(s) | 23 |
| NlaIV | GGNNCC | 3 cut(s) | 318, 564, 657 |
| NmeAIII | GCCGAG | 1 cut(s) | 539 |
| PfeI | GAWTC | 3 cut(s) | 481, 578, 638 |
| PkrI | GCNGC | 4 cut(s) | 34, 397, 433, 436 |
| PluTI | GGCGCC | 1 cut(s) | 566 |
| Psp6I | CCWGG | 1 cut(s) | 598 |
| PspGI | CCWGG | 1 cut(s) | 598 |
| PspN4I | GGNNCC | 3 cut(s) | 318, 564, 657 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PstI | CTGCAG | 2 cut(s) | 325, 436 |
| SatI | GCNGC | 4 cut(s) | 33, 396, 432, 435 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| ScrFI | CCNGG | 1 cut(s) | 600 |
| SduI | GDGCHC | 1 cut(s) | 169 |
| SfcI | CTRYAG | 3 cut(s) | 12, 321, 432 |
| SfoI | GGCGCC | 1 cut(s) | 564 |
| Sse9I | AATT | 1 cut(s) | 469 |
| SsiI | CCGC | 1 cut(s) | 288 |
| SspDI | GGCGCC | 1 cut(s) | 562 |
| StyD4I | CCNGG | 1 cut(s) | 598 |
| TaaI | ACNGT | 2 cut(s) | 149, 592 |
| TaqI | TCGA | 1 cut(s) | 91 |
| TasI | AATT | 1 cut(s) | 469 |
| TfiI | GAWTC | 3 cut(s) | 481, 578, 638 |
| TseI | GCWGC | 4 cut(s) | 32, 395, 431, 434 |