AT5G07330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015895
Physical Location & Seq
Forward (+)
2315947 .. 2316874
928 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07330.1

Sequence Viewer

Length: 498 bp
ATGGCCGTTCGATCAACCGGTCACTTGAAAAACGTAGTGCAGAGGTTAAGAACTTACACGAAGGCGACAACCGTACCAAGATCCAAAGCGTATTCTACGGCGGCAACAGAGTATGGTGGCCAGAGAACCGCCACCACAGCGGCAGCAACAAAAGGTGACTTCACACCAGTTTACGTCTCCATAGGATTGATTTCATTGTCAGTAACATTTGGTGTCTACACTGCGTATCTTCATCTACATGAAAACCCTGGCGTACGTGTCAACAAGAAGATGAGAGAGACCGTTCCCGAGATCGAAGATCCAGATAGAGTTCTAAACGAAGCGGACCGGTTCGCTAACAGGTCTTGGTTTAGGAAAATAGCTCACGTTCAAGAGTTTGACAAGCAGGATGTGATCTCTGACCCAATCAGGAAAGACCAGTTTGCTCATAAACCTCGTGCCTTGACGCTTAAGGATGTTGGCGTTGATCCTAAGATATCGGCTGCTGCAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

9.8

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AciI CCGC 4 cut(s) 101, 129, 140, 323
AclWI GGATC 3 cut(s) 75, 293, 461
AcoI YGGCCR 2 cut(s) 3, 118
AfaI GTAC 2 cut(s) 75, 255
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 256
AgeI ACCGGT 2 cut(s) 17, 327
AgsI TTSAA 2 cut(s) 28, 371
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 362, 491
AluI AGCT 2 cut(s) 362, 491
Alw26I GTCTC 2 cut(s) 181, 272
AlwI GGATC 3 cut(s) 75, 293, 461
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 3, 118
ApeKI GCWGC 4 cut(s) 143, 482, 485, 488
AsiGI ACCGGT 2 cut(s) 17, 327
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 325
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BalI TGGCCA 1 cut(s) 120
BauI CACGAG 1 cut(s) 435
BbvI GCAGC 3 cut(s) 155, 469, 472
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 181, 272
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 449
BisI GCNGC 6 cut(s) 102, 141, 144, 483, 486, 489
BlsI GCNGC 6 cut(s) 103, 142, 145, 484, 487, 490
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 2 cut(s) 17, 327
Bse118I RCCGGY 2 cut(s) 17, 327
Bse1I ACTGG 2 cut(s) 167, 418
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 2 cut(s) 394, 460
BseNI ACTGG 2 cut(s) 167, 418
BseXI GCAGC 3 cut(s) 155, 469, 472
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 2 cut(s) 5, 120
BshTI ACCGGT 2 cut(s) 17, 327
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 18, 328
BsiWI CGTACG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 181, 272
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 5, 120
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 287
Bsp143I GATC 6 cut(s) 11, 80, 291, 298, 393, 466
BspACI CCGC 4 cut(s) 101, 129, 140, 323
BspANI GGCC 2 cut(s) 5, 120
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 3 cut(s) 75, 293, 461
BspTI CTTAAG 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 272
BsrFI RCCGGY 2 cut(s) 17, 327
BsrI ACTGG 2 cut(s) 167, 418
BssAI RCCGGY 2 cut(s) 17, 327
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 6 cut(s) 11, 80, 291, 298, 393, 466
BssSI CACGAG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 73, 283
BstAFI CTTAAG 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 394, 460
BstKTI GATC 6 cut(s) 14, 83, 294, 301, 396, 469
BstMAI GTCTC 2 cut(s) 181, 272
BstMBI GATC 6 cut(s) 11, 80, 291, 298, 393, 466
BstMWI GCNNNNNNNGC 2 cut(s) 137, 488
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 155, 469, 472
BstX2I RGATCY 2 cut(s) 80, 298
BstYI RGATCY 2 cut(s) 80, 298
BsuRI GGCC 2 cut(s) 5, 120
BtsCI GGATG 2 cut(s) 394, 460
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cfr10I RCCGGY 2 cut(s) 17, 327
Cfr13I GGNCC 1 cut(s) 325
CpoI CGGWCCG 1 cut(s) 325
CseI GACGC 1 cut(s) 454
Csp6I GTAC 2 cut(s) 74, 254
CspAI ACCGGT 2 cut(s) 17, 327
CspI CGGWCCG 1 cut(s) 325
CviAII CATG 1 cut(s) 239
CviJI RGCY 5 cut(s) 5, 120, 362, 482, 491
CviKI_1 RGCY 5 cut(s) 5, 120, 362, 482, 491
CviQI GTAC 2 cut(s) 74, 254
DdeI CTNAG 1 cut(s) 471
DpnI GATC 6 cut(s) 13, 82, 293, 300, 395, 468
DpnII GATC 6 cut(s) 11, 80, 291, 298, 393, 466
EaeI YGGCCR 2 cut(s) 3, 118
Eco31I GGTCTC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 242
FaiI YATR 4 cut(s) 114, 182, 240, 429
FatI CATG 1 cut(s) 238
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 6 cut(s) 102, 141, 144, 483, 486, 489
FokI GGATG 2 cut(s) 401, 467
Fsp4HI GCNGC 6 cut(s) 102, 141, 144, 483, 486, 489
GluI GCNGC 6 cut(s) 102, 141, 144, 483, 486, 489
HaeIII GGCC 2 cut(s) 5, 120
HapII CCGG 2 cut(s) 18, 328
HgaI GACGC 1 cut(s) 454
Hin1II CATG 1 cut(s) 242
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 18, 328
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 172, 217, 262
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 4 cut(s) 287, 302, 371, 409
Hpy8I GTNNAC 3 cut(s) 172, 217, 262
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 73, 283
HpyCH4IV ACGT 4 cut(s) 33, 174, 256, 366
HpyCH4V TGCA 2 cut(s) 40, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 488
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 4 cut(s) 33, 174, 256, 366
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 6 cut(s) 11, 80, 291, 298, 393, 466
Lsp1109I GCAGC 3 cut(s) 155, 469, 472
MaeII ACGT 4 cut(s) 33, 174, 256, 366
MaeIII GTNAC 3 cut(s) 20, 155, 202
MalI GATC 6 cut(s) 13, 82, 293, 300, 395, 468
MboI GATC 6 cut(s) 11, 80, 291, 298, 393, 466
MboII GAAGA 3 cut(s) 221, 280, 308
MflI RGATCY 2 cut(s) 80, 298
MlsI TGGCCA 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 120
MnlI CCTC 2 cut(s) 36, 444
Mox20I TGGCCA 1 cut(s) 120
MscI TGGCCA 1 cut(s) 120
MseI TTAA 2 cut(s) 47, 450
MslI CAYNNNNRTG 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 2 cut(s) 18, 328
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 137, 488
NdeII GATC 6 cut(s) 11, 80, 291, 298, 393, 466
NlaIII CATG 1 cut(s) 242
NmuCI GTSAC 2 cut(s) 20, 155
Pfl23II CGTACG 1 cut(s) 253
PinAI ACCGGT 2 cut(s) 17, 327
PkrI GCNGC 6 cut(s) 103, 142, 145, 484, 487, 490
Ppu21I YACGTR 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspLI CGTACG 1 cut(s) 253
PspPI GGNCC 1 cut(s) 325
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 80, 298
RsaI GTAC 2 cut(s) 75, 255
RsaNI GTAC 2 cut(s) 74, 254
RseI CAYNNNNRTG 1 cut(s) 237
Rsr2I CGGWCCG 1 cut(s) 325
RsrII CGGWCCG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 47, 450
SatI GCNGC 6 cut(s) 102, 141, 144, 483, 486, 489
Sau3AI GATC 6 cut(s) 11, 80, 291, 298, 393, 466
Sau96I GGNCC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SsiI CCGC 4 cut(s) 101, 129, 140, 323
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 73, 283
TaiI ACGT 4 cut(s) 36, 177, 259, 369
TaqI TCGA 2 cut(s) 10, 294
TauI GCSGC 2 cut(s) 104, 143
Tru1I TTAA 2 cut(s) 47, 450
Tru9I TTAA 2 cut(s) 47, 450
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 20, 155
TseI GCWGC 4 cut(s) 143, 482, 485, 488
Tsp45I GTSAC 2 cut(s) 20, 155
TspDTI ATGAA 3 cut(s) 183, 221, 255
TspRI CASTG 1 cut(s) 226
Vha464I CTTAAG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.