FvH4_5g09901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015895
Physical Location & Seq
Forward (+)
5660408 .. 5661142
735 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09901.t1

Sequence Viewer

Length: 447 bp
ATGGCTTTCAGATCAATGAATCAATGGCAACGAGTGGTGAGTGGCTTAAGAGGTAAGAAGCCCAGGGGAGATTTTGTGCCTGTGTATGTAGCTGTTGGGATGATAGCACTTTCAGTATCGCTGGGACTCCACACTGCCAAGCAACAGCTCTTCCACAACCCCAACGTCTTTGTGAAGAAGGATCGGCGGGAGATGCTGCCGGAGGTGGTGGAGCCTGACCGTGTGGTGGAGGACGCCGATAAGTTTCTTAACAAATCCTTCTTCAGGAAGGTAGCTCATATCCAGGAGTCTGACAACCGCGTTAAATCTGACCCTATTCATGGAGATATTTATGCTCAGCGGCCTCGTGCTGTGACTCTCAAAGACGCCGGAGTAGATCCTAAAAAGGTTGCAGAAGGACTAGACCCTCGAATTCGTGCTAGACTTGGAGTAGATCCCAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.76

Weight (kDa)

10.04

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 300
AciI CCGC 3 cut(s) 187, 298, 340
AclWI GGATC 3 cut(s) 189, 371, 428
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 234, 366
AfiI CCNNNNNNNGG 3 cut(s) 226, 264, 320
AflII CTTAAG 1 cut(s) 46
AjnI CCWGG 2 cut(s) 62, 282
AluBI AGCT 3 cut(s) 92, 148, 275
AluI AGCT 3 cut(s) 92, 148, 275
AlwI GGATC 3 cut(s) 189, 371, 428
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 49
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 64, 284
BfaI CTAG 2 cut(s) 401, 420
BfrI CTTAAG 1 cut(s) 46
BisI GCNGC 2 cut(s) 197, 341
BlpI GCTNAGC 1 cut(s) 336
BlsI GCNGC 2 cut(s) 198, 342
Bme1390I CCNGG 2 cut(s) 64, 284
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 64, 284
BmsI GCATC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 336
BsaHI GRCGYC 2 cut(s) 234, 366
BsaJI CCNNGG 2 cut(s) 62, 63
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 264, 320
BseBI CCWGG 2 cut(s) 64, 284
BseDI CCNNGG 2 cut(s) 62, 63
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 226, 264, 320
BseMII CTCAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 343
BsiSI CCGG 2 cut(s) 200, 369
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 3 cut(s) 226, 264, 320
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 343
Bsp143I GATC 4 cut(s) 11, 181, 376, 433
Bsp1720I GCTNAGC 1 cut(s) 336
BspACI CCGC 3 cut(s) 187, 298, 340
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 3 cut(s) 189, 371, 428
BspQI GCTCTTC 1 cut(s) 155
BspTI CTTAAG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 62, 63
BssMI GATC 4 cut(s) 11, 181, 376, 433
BssNI GRCGYC 2 cut(s) 234, 366
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 64, 284
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 234, 366
BstAFI CTTAAG 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 336
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 300
BstKTI GATC 4 cut(s) 14, 184, 379, 436
BstMBI GATC 4 cut(s) 11, 181, 376, 433
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 2 cut(s) 64, 284
BstSCI CCNGG 2 cut(s) 62, 282
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 376, 433
BstYI RGATCY 2 cut(s) 376, 433
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
CseI GACGC 2 cut(s) 242, 374
CviAII CATG 1 cut(s) 320
CviJI RGCY 8 cut(s) 5, 45, 61, 92, 148, 214, 275, 343
CviKI_1 RGCY 8 cut(s) 5, 45, 61, 92, 148, 214, 275, 343
DdeI CTNAG 1 cut(s) 336
DpnI GATC 4 cut(s) 13, 183, 378, 435
DpnII GATC 4 cut(s) 11, 181, 376, 433
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 62, 282
FaeI CATG 1 cut(s) 323
FaiI YATR 4 cut(s) 87, 279, 321, 333
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 197, 341
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 197, 341
FspBI CTAG 2 cut(s) 401, 420
GluI GCNGC 2 cut(s) 197, 341
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 343
HapII CCGG 2 cut(s) 200, 369
HgaI GACGC 2 cut(s) 242, 374
Hin1I GRCGYC 2 cut(s) 234, 366
Hin1II CATG 1 cut(s) 323
HinfI GANTC 4 cut(s) 19, 126, 287, 355
HpaII CCGG 2 cut(s) 200, 369
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 11, 292, 310
Hpy188III TCNNGA 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 172, 262, 268, 389
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 2 cut(s) 234, 366
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 4 cut(s) 11, 181, 376, 433
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 401, 420
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 13, 183, 378, 435
MboI GATC 4 cut(s) 11, 181, 376, 433
MboII GAAGA 3 cut(s) 142, 187, 253
MflI RGATCY 2 cut(s) 376, 433
MluCI AATT 1 cut(s) 411
MlyI GAGTC 3 cut(s) 120, 296, 349
MnlI CCTC 5 cut(s) 44, 196, 223, 354, 417
MseI TTAA 3 cut(s) 47, 249, 303
MspA1I CMGCKG 1 cut(s) 340
MspCI CTTAAG 1 cut(s) 46
MspI CCGG 2 cut(s) 200, 369
MspR9I CCNGG 2 cut(s) 64, 284
MvaI CCWGG 2 cut(s) 64, 284
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 4 cut(s) 11, 181, 376, 433
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 352
PasI CCCWGGG 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 2 cut(s) 198, 342
PleI GAGTC 3 cut(s) 120, 295, 349
PpsI GAGTC 3 cut(s) 120, 295, 349
Psp6I CCWGG 2 cut(s) 62, 282
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 2 cut(s) 62, 282
PspN4I GGNNCC 1 cut(s) 213
PsuI RGATCY 2 cut(s) 376, 433
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 47, 249, 303
SatI GCNGC 2 cut(s) 197, 341
Sau3AI GATC 4 cut(s) 11, 181, 376, 433
SchI GAGTC 3 cut(s) 120, 296, 349
ScrFI CCNGG 2 cut(s) 64, 284
SetI ASST 8 cut(s) 55, 94, 150, 168, 207, 273, 277, 390
SfaNI GCATC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 1 cut(s) 411
SsiI CCGC 3 cut(s) 187, 298, 340
SspMI CTAG 2 cut(s) 401, 420
StyD4I CCNGG 2 cut(s) 62, 282
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 409
TasI AATT 1 cut(s) 411
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 3 cut(s) 47, 249, 303
Tru9I TTAA 3 cut(s) 47, 249, 303
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 32, 308
TspRI CASTG 1 cut(s) 139
Vha464I CTTAAG 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 262
XapI RAATTY 1 cut(s) 411
XspI CTAG 2 cut(s) 401, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.