MD00G1076100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0015895
Physical Location & Seq
Forward (+)
15338568 .. 15339148
581 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1076100.v1.1.491

Sequence Viewer

Length: 453 bp
ATGGCTTTCAGATCAATGAATCCCTGGAAACAAATGTCCACCGCCTTACGCGGATACGCCACCTCGACTTCCCCGAAGATGAAACCCTACTCCCCGGCTGCCGGTGCCACCGAAAAGCCCCAACAGAGCAACTTCAAGAGGTTTATGAGGGGCGACTTCGTGCCGGTCTACGTCGTGCTCGGGATGATAGCGGTGTCGGTGGGGCTGGGGCTCCATACCGCCAAGCAGCACCTGAAGCACAACCCCCACGTCTACGTGAAGAAGGAACGGAGAGAGACGCTGCCGGAGGTGATGGAGCCGGAGCGCGTGGTGGCGGAGTCTGACAAGTTCGTTAAAAATTCGTTTTTCAGGAAGGTGGCGCATGTTCAGGAGTTTGACGACTACAATCACGCCGTTAAGGATCCGATCCGGAAAGATGTTTTCGCTCATAAACCCGACCCACCCCGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.18

Weight (kDa)

9.91

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccI GTMKAC 2 cut(s) 168, 252
AccII CGCG 2 cut(s) 51, 306
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 5 cut(s) 42, 51, 191, 219, 314
AclWI GGATC 3 cut(s) 395, 400, 408
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 3 cut(s) 395, 400, 408
AlwNI CAGNNNCTG 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 408
ApeKI GCWGC 3 cut(s) 98, 226, 280
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 2 cut(s) 306, 361
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 179
BamHI GGATCC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 85, 238, 267
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 3 cut(s) 99, 227, 281
BlsI GCNGC 3 cut(s) 100, 228, 282
Bme1390I CCNGG 2 cut(s) 25, 95
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 4 cut(s) 106, 212, 297, 402
BmrFI CCNGG 2 cut(s) 25, 95
BpuMI CCSGG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 23, 93
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 2 cut(s) 101, 163
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 23, 93
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 85, 238, 267
BseYI CCCAGC 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 51, 306
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 6 cut(s) 95, 102, 164, 284, 299, 409
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 269
BsmBI CGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 180, 213
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 3 cut(s) 11, 400, 405
BspACI CCGC 5 cut(s) 42, 51, 191, 219, 314
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 2 cut(s) 51, 306
BspLI GGNNCC 4 cut(s) 106, 212, 297, 402
BspPI GGATC 3 cut(s) 395, 400, 408
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 101, 163
BssAI RCCGGY 2 cut(s) 101, 163
BssECI CCNNGG 2 cut(s) 23, 93
BssMI GATC 3 cut(s) 11, 400, 405
Bst2UI CCWGG 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 256
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 51, 306
BstHHI GCGC 2 cut(s) 306, 361
BstKTI GATC 3 cut(s) 14, 403, 408
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 3 cut(s) 11, 400, 405
BstMWI GCNNNNNNNGC 2 cut(s) 104, 235
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 23, 93
BstUI CGCG 2 cut(s) 51, 306
BstV1I GCAGC 3 cut(s) 85, 238, 267
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuI GTATCC 1 cut(s) 47
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 232
CfoI GCGC 2 cut(s) 306, 361
Cfr10I RCCGGY 2 cut(s) 101, 163
CseI GACGC 1 cut(s) 286
CviAII CATG 1 cut(s) 362
CviJI RGCY 6 cut(s) 5, 98, 118, 205, 211, 298
CviKI_1 RGCY 6 cut(s) 5, 98, 118, 205, 211, 298
DpnI GATC 3 cut(s) 13, 402, 407
DpnII GATC 3 cut(s) 11, 400, 405
EciI GGCGGA 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 1 cut(s) 365
FaiI YATR 4 cut(s) 146, 216, 363, 429
FatI CATG 1 cut(s) 361
FblI GTMKAC 2 cut(s) 168, 252
Fnu4HI GCNGC 3 cut(s) 99, 227, 281
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 99, 227, 281
GlaI GCGC 2 cut(s) 305, 360
GluI GCNGC 3 cut(s) 99, 227, 281
GsaI CCCAGC 1 cut(s) 209
HapII CCGG 6 cut(s) 95, 102, 164, 284, 299, 409
HgaI GACGC 1 cut(s) 286
HhaI GCGC 2 cut(s) 306, 361
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 2 cut(s) 304, 359
HinP1I GCGC 2 cut(s) 304, 359
HinfI GANTC 2 cut(s) 19, 317
HpaII CCGG 6 cut(s) 95, 102, 164, 284, 299, 409
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 3 cut(s) 39, 169, 253
Hpy188I TCNGA 3 cut(s) 11, 322, 405
Hpy188III TCNNGA 6 cut(s) 136, 181, 349, 368, 409, 450
Hpy8I GTNNAC 3 cut(s) 39, 169, 253
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 256, 346
HpyCH4IV ACGT 3 cut(s) 171, 249, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 235
HpySE526I ACGT 3 cut(s) 171, 249, 255
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 2 cut(s) 304, 359
Kpn2I TCCGGA 1 cut(s) 408
Kzo9I GATC 3 cut(s) 11, 400, 405
LmnI GCTCC 3 cut(s) 216, 295, 301
Lsp1109I GCAGC 3 cut(s) 85, 238, 267
MaeII ACGT 3 cut(s) 171, 249, 255
MalI GATC 3 cut(s) 13, 402, 407
MboI GATC 3 cut(s) 11, 400, 405
MboII GAAGA 2 cut(s) 88, 271
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 180, 213
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 4 cut(s) 73, 132, 141, 280
MroI TCCGGA 1 cut(s) 408
MseI TTAA 2 cut(s) 333, 396
MspI CCGG 6 cut(s) 95, 102, 164, 284, 299, 409
MspR9I CCNGG 2 cut(s) 25, 95
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 2 cut(s) 51, 306
MwoI GCNNNNNNNGC 2 cut(s) 104, 235
NciI CCSGG 1 cut(s) 95
NdeII GATC 3 cut(s) 11, 400, 405
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 4 cut(s) 106, 212, 297, 402
NspI RCATGY 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 100, 228, 282
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 4 cut(s) 106, 212, 297, 402
PstNI CAGNNNCTG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 400
SaqAI TTAA 2 cut(s) 333, 396
SatI GCNGC 3 cut(s) 99, 227, 281
Sau3AI GATC 3 cut(s) 11, 400, 405
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 25, 95
SduI GDGCHC 2 cut(s) 180, 213
SetI ASST 8 cut(s) 65, 143, 174, 234, 252, 258, 291, 357
Sse9I AATT 1 cut(s) 337
SsiI CCGC 5 cut(s) 42, 51, 191, 219, 314
StyD4I CCNGG 2 cut(s) 23, 93
TaiI ACGT 3 cut(s) 174, 252, 258
TaqI TCGA 1 cut(s) 65
TasI AATT 1 cut(s) 337
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 333, 396
Tru9I TTAA 2 cut(s) 333, 396
TseI GCWGC 3 cut(s) 98, 226, 280
TspDTI ATGAA 2 cut(s) 32, 95
TspGWI ACGGA 1 cut(s) 283
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 168, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.