Rorug06G0490200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015895
Physical Location & Seq
Forward (+)
60833800 .. 60836211
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0490200.1

Sequence Viewer

Length: 789 bp
ATGTCGAGGAGGCAAGCGAATGCGAACCTATCTCGGCGACTGGGAGATGCCGGAGGCGGTTGGCTCTCAGGCTCGTCCTATTCTAAATCAAGGTCTTCTCCCATCTTATATGTCGCTCTCATTGCCGTGGGAGCATTGCTTATTCTTGCCTATTCACACAGTGGCAGAGGTGGAATTGGTAATACTAGAGGGGCTATTGGCAGGGTTCAAGCGGAGGTCCAGCGAGCAATTCCTGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTGCACGTTGGCCCTGATACTTGTACAGTGGTTTATAAATTGTGTAGTGAGGAGGAAACTGAAGCCTGGGGTATGGATCCGTACAATGTAGAGGATGCTGATAGAAGTTGCAAAGCTCTTGTGCGCAAAGGCATAGTGCGTGTTGATGATATCAAGTATCCACTTCCATACAGGCCAAAATCATTTTCTGTTGTCATTGTTTCGGATTCTTTGGATTATTTGTCTGAAAGATACCTCAACAAGACCCTTCCGGATCTGGCTAGGGTATCAGCTGATGGTGTTGTAATCTTTACAGGCAAGATCTTATGCTCTCCTGGCAAGCAGAGAACTAAAGCAGCTGAGGTCTCCAAATTTGGTAGGGCGGCTAAATTGAGGAACACAGCCTGGTGGACTAAGTTTTTTGGGCAGGTTAGCTTAGAAGAGAACGAAGGTGCTGGCAAGAAGTTTAATATTGCTGCAACAAAGATGTCATTTGTCTCAAATTGTCAAGTTTTCCACCTCAGGTCATTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.72

Weight (kDa)

9.7

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc16I TGCGCA 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 3 cut(s) 57, 212, 635
AclWI GGATC 3 cut(s) 344, 357, 534
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 354
AdeI CACNNNGTG 1 cut(s) 161
AfaI GTAC 2 cut(s) 298, 356
AgsI TTSAA 3 cut(s) 209, 241, 784
AjnI CCWGG 3 cut(s) 338, 586, 656
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AluBI AGCT 4 cut(s) 389, 545, 611, 687
AluI AGCT 4 cut(s) 389, 545, 611, 687
Alw26I GTCTC 2 cut(s) 622, 754
AlwI GGATC 3 cut(s) 344, 357, 534
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 283, 446
ApeKI GCWGC 2 cut(s) 608, 728
ApoI RAATTY 1 cut(s) 623
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 217, 284
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 773
BamHI GGATCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 2 cut(s) 620, 715
BccI CCATC 2 cut(s) 110, 542
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 3 cut(s) 340, 588, 658
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 622, 754
BfaI CTAG 2 cut(s) 186, 534
BfuAI ACCTGC 1 cut(s) 670
BfuI GTATCC 1 cut(s) 441
BglII AGATCT 1 cut(s) 573
BisI GCNGC 3 cut(s) 609, 636, 729
BlsI GCNGC 3 cut(s) 610, 637, 730
Bme1390I CCNGG 3 cut(s) 340, 588, 658
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 217, 284
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 3 cut(s) 340, 588, 658
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 37, 358
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 126, 339
BsaWI WCCGGW 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 45
Bse21I CCTNAGG 1 cut(s) 773
Bse3DI GCAATG 2 cut(s) 120, 134
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 3 cut(s) 340, 588, 658
BseDI CCNNGG 2 cut(s) 126, 339
BseGI GGATG 1 cut(s) 373
BseMI GCAATG 2 cut(s) 120, 134
BseMII CTCAG 3 cut(s) 81, 603, 787
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 22, 338
BseXI GCAGC 2 cut(s) 620, 715
BshFI GGCC 2 cut(s) 285, 448
BsiSI CCGG 2 cut(s) 51, 524
BsmAI GTCTC 2 cut(s) 622, 754
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 2 cut(s) 285, 448
Bso31I GGTCTC 1 cut(s) 622
Bsp13I TCCGGA 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 3 cut(s) 349, 526, 573
BspACI CCGC 3 cut(s) 57, 212, 635
BspANI GGCC 2 cut(s) 285, 448
BspCNI CTCAG 3 cut(s) 80, 604, 786
BspEI TCCGGA 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 351
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 3 cut(s) 344, 357, 534
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 2 cut(s) 120, 134
BsrGI TGTACA 1 cut(s) 296
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 126, 339
BssMI GATC 3 cut(s) 349, 526, 573
Bst2UI CCWGG 3 cut(s) 340, 588, 658
Bst4CI ACNGT 2 cut(s) 161, 301
Bst6I CTCTTC 1 cut(s) 687
BstAUI TGTACA 1 cut(s) 296
BstC8I GCNNGC 5 cut(s) 15, 225, 263, 593, 709
BstDEI CTNAG 5 cut(s) 67, 612, 666, 688, 773
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 373
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 3 cut(s) 352, 529, 576
BstMAI GTCTC 2 cut(s) 622, 754
BstMBI GATC 3 cut(s) 349, 526, 573
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 588
BstNI CCWGG 3 cut(s) 340, 588, 658
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 338, 586, 656
BstV1I GCAGC 2 cut(s) 620, 715
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 3 cut(s) 349, 526, 573
BstYI RGATCY 3 cut(s) 349, 526, 573
Bsu36I CCTNAGG 1 cut(s) 773
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 285, 448
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 166, 306
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 5 cut(s) 15, 225, 263, 593, 709
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 217, 284
Csp6I GTAC 2 cut(s) 297, 355
CviAII CATG 1 cut(s) 262
CviQI GTAC 2 cut(s) 297, 355
DdeI CTNAG 5 cut(s) 67, 612, 666, 688, 773
DpnI GATC 3 cut(s) 351, 528, 575
DpnII GATC 3 cut(s) 349, 526, 573
DraIII CACNNNGTG 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 622
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 773
EcoRII CCWGG 3 cut(s) 338, 586, 656
EcoRV GATATC 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 267
FaeI CATG 1 cut(s) 265
FatI CATG 1 cut(s) 261
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 609, 636, 729
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 609, 636, 729
FspBI CTAG 2 cut(s) 186, 534
FspI TGCGCA 1 cut(s) 398
GlaI GCGC 1 cut(s) 398
GluI GCNGC 3 cut(s) 609, 636, 729
HaeIII GGCC 2 cut(s) 285, 448
HapII CCGG 2 cut(s) 51, 524
HhaI GCGC 1 cut(s) 399
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HinfI GANTC 1 cut(s) 479
HpaII CCGG 2 cut(s) 51, 524
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 2 cut(s) 478, 499
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 2 cut(s) 530, 695
HpyCH4III ACNGT 2 cut(s) 161, 301
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 265, 277, 384, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 588
HpyF3I CTNAG 5 cut(s) 67, 612, 666, 688, 773
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 349, 526, 573
LmnI GCTCC 1 cut(s) 131
Lsp1109I GCAGC 2 cut(s) 620, 715
LweI GCATC 2 cut(s) 37, 358
MaeI CTAG 2 cut(s) 186, 534
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 351, 528, 575
MboI GATC 3 cut(s) 349, 526, 573
MboII GAAGA 3 cut(s) 87, 253, 704
MfeI CAATTG 1 cut(s) 784
MflI RGATCY 3 cut(s) 349, 526, 573
MluCI AATT 7 cut(s) 174, 228, 311, 623, 641, 754, 784
Mph1103I ATGCAT 1 cut(s) 267
MroI TCCGGA 1 cut(s) 523
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 545, 611
MspI CCGG 2 cut(s) 51, 524
MspR9I CCNGG 3 cut(s) 340, 588, 658
MunI CAATTG 1 cut(s) 784
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 3 cut(s) 340, 588, 658
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 588
NdeI CATATG 1 cut(s) 250
NdeII GATC 3 cut(s) 349, 526, 573
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 351
NmeAIII GCCGAG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 3 cut(s) 610, 637, 730
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 338, 586, 656
PspGI CCWGG 3 cut(s) 338, 586, 656
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 217, 284
PsuI RGATCY 3 cut(s) 349, 526, 573
PvuII CAGCTG 2 cut(s) 545, 611
RsaI GTAC 2 cut(s) 298, 356
RsaNI GTAC 2 cut(s) 297, 355
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 3 cut(s) 609, 636, 729
Sau3AI GATC 3 cut(s) 349, 526, 573
Sau96I GGNCC 2 cut(s) 217, 284
ScrFI CCNGG 3 cut(s) 340, 588, 658
SfaNI GCATC 2 cut(s) 37, 358
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 265
Sse9I AATT 7 cut(s) 174, 228, 311, 623, 641, 754, 784
SsiI CCGC 3 cut(s) 57, 212, 635
SspI AATATT 1 cut(s) 724
SspMI CTAG 2 cut(s) 186, 534
StyD4I CCNGG 3 cut(s) 338, 586, 656
TaaI ACNGT 2 cut(s) 161, 301
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 5
TasI AATT 7 cut(s) 174, 228, 311, 623, 641, 754, 784
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 2 cut(s) 166, 306
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 608, 728
Tsp45I GTSAC 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 166, 306
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 623
XceI RCATGY 1 cut(s) 265
XspI CTAG 2 cut(s) 186, 534
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.