Rmu_co8426879.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8426879.1
OG0015895
Physical Location & Seq
Reverse (-)
624 .. 1273
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8426879.1_g000001.1.cds

Sequence Viewer

Length: 552 bp
atggcttttagatcaatgaatcagtggcaacgattgttgagtgggttaagagggtatgcaacctcaaccttaccgaagatgaaagcgtatgccccaactgctaatttcgccgagcaacagagcagtaagaagccaaggggagatttcgtgcccgtgtatgtagctgttgggatgatagcactttcagtggggctgggactccacactgccaagcaacagctcttccacaacccccaagtctttgtgaagaaggagcggcgggagatgctgccggaggtggtggagcccgaccgtgtggtggaggacgctgataagttttttaacaaatcctttttcaggaaggtggctcatgttcaggagtttgacaatcccataacatctgatcctactcatggagatgtttatgctcagcggccacgtgctgtgactctcaaagaggccggagtagatcctaaagtggtcgccgagggactagatcctcgaatccgtgcgagacttggggtagatccgaaaaaggtcgtggaagaagatactaaagcagcagctgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.44

Weight (kDa)

9.55

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 3 cut(s) 256, 259, 412
AclWI GGATC 4 cut(s) 377, 443, 470, 500
AcoI YGGCCR 1 cut(s) 413
AcvI CACGTG 1 cut(s) 419
AfiI CCNNNNNNNGG 3 cut(s) 298, 336, 392
AluBI AGCT 3 cut(s) 164, 220, 545
AluI AGCT 3 cut(s) 164, 220, 545
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 4 cut(s) 377, 443, 470, 500
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 2 cut(s) 413, 438
ApeKI GCWGC 4 cut(s) 268, 539, 542, 545
BaeGI GKGCMC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 288
BbrPI CACGTG 1 cut(s) 419
BbvI GCAGC 2 cut(s) 255, 532
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 1 cut(s) 473
BisI GCNGC 6 cut(s) 257, 269, 413, 540, 543, 546
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 6 cut(s) 258, 270, 414, 541, 544, 547
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 134, 465
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 336, 392
BseDI CCNNGG 2 cut(s) 134, 465
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 298, 336, 392
BseMII CTCAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 2 cut(s) 255, 532
BseYI CCCAGC 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 415, 440
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 272, 441
BslFI GGGAC 2 cut(s) 210, 483
BslI CCNNNNNNNGG 3 cut(s) 298, 336, 392
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 2 cut(s) 210, 483
BsnI GGCC 2 cut(s) 415, 440
Bsp1286I GDGCHC 2 cut(s) 153, 288
Bsp143I GATC 5 cut(s) 11, 382, 448, 475, 505
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 3 cut(s) 256, 259, 412
BspANI GGCC 2 cut(s) 415, 440
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 4 cut(s) 377, 443, 470, 500
BspQI GCTCTTC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 134, 465
BssMI GATC 5 cut(s) 11, 382, 448, 475, 505
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 419
BstDEI CTNAG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 5 cut(s) 14, 385, 451, 478, 508
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 5 cut(s) 11, 382, 448, 475, 505
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 98, 107, 265, 545
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 255, 532
BstX2I RGATCY 3 cut(s) 448, 475, 505
BstYI RGATCY 3 cut(s) 448, 475, 505
BsuRI GGCC 2 cut(s) 415, 440
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 29, 192, 204
CaiI CAGNNNCTG 1 cut(s) 545
CseI GACGC 1 cut(s) 314
CviAII CATG 2 cut(s) 350, 392
DdeI CTNAG 1 cut(s) 408
DpnI GATC 5 cut(s) 13, 384, 450, 477, 507
DpnII GATC 5 cut(s) 11, 382, 448, 475, 505
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 2 cut(s) 353, 395
FaiI YATR 7 cut(s) 57, 90, 159, 351, 374, 393, 405
FaqI GGGAC 2 cut(s) 210, 483
FatI CATG 2 cut(s) 349, 391
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 6 cut(s) 257, 269, 413, 540, 543, 546
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 6 cut(s) 257, 269, 413, 540, 543, 546
FspBI CTAG 1 cut(s) 473
GluI GCNGC 6 cut(s) 257, 269, 413, 540, 543, 546
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 415, 440
HapII CCGG 2 cut(s) 272, 441
HgaI GACGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 353, 395
HinfI GANTC 4 cut(s) 19, 198, 427, 483
HpaII CCGG 2 cut(s) 272, 441
Hpy188I TCNGA 2 cut(s) 382, 510
Hpy188III TCNNGA 2 cut(s) 337, 356
HpyAV CCTTC 2 cut(s) 244, 334
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 107, 265, 545
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 2 cut(s) 353, 395
Kzo9I GATC 5 cut(s) 11, 382, 448, 475, 505
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 253, 283
LpnPI CCDG 5 cut(s) 179, 285, 322, 341, 454
Lsp1109I GCAGC 2 cut(s) 255, 532
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 1 cut(s) 424
MalI GATC 5 cut(s) 13, 384, 450, 477, 507
MbiI CCGCTC 1 cut(s) 256
MboI GATC 5 cut(s) 11, 382, 448, 475, 505
MboII GAAGA 5 cut(s) 88, 214, 259, 536, 539
MflI RGATCY 3 cut(s) 448, 475, 505
MhlI GDGCHC 2 cut(s) 153, 288
MluCI AATT 1 cut(s) 103
MlyI GAGTC 2 cut(s) 192, 421
MnlI CCTC 7 cut(s) 44, 73, 268, 295, 430, 460, 489
MseI TTAA 2 cut(s) 47, 321
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 2 cut(s) 412, 545
MspI CCGG 2 cut(s) 272, 441
MwoI GCNNNNNNNGC 4 cut(s) 98, 107, 265, 545
NdeII GATC 5 cut(s) 11, 382, 448, 475, 505
NlaIII CATG 2 cut(s) 353, 395
NlaIV GGNNCC 1 cut(s) 285
NmeAIII GCCGAG 2 cut(s) 136, 490
NmuCI GTSAC 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 19, 483
PkrI GCNGC 6 cut(s) 258, 270, 414, 541, 544, 547
PleI GAGTC 2 cut(s) 192, 421
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 2 cut(s) 192, 421
Ppu21I YACGTR 1 cut(s) 419
PspCI CACGTG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 3 cut(s) 448, 475, 505
PvuII CAGCTG 1 cut(s) 545
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 47, 321
SatI GCNGC 6 cut(s) 257, 269, 413, 540, 543, 546
Sau3AI GATC 5 cut(s) 11, 382, 448, 475, 505
SchI GAGTC 2 cut(s) 192, 421
SduI GDGCHC 2 cut(s) 153, 288
SetI ASST 9 cut(s) 65, 71, 166, 222, 279, 345, 421, 519, 547
SfaNI GCATC 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 1 cut(s) 103
SsiI CCGC 3 cut(s) 256, 259, 412
SspMI CTAG 1 cut(s) 473
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 481
TasI AATT 1 cut(s) 103
TauI GCSGC 2 cut(s) 259, 415
TfiI GAWTC 2 cut(s) 19, 483
Tru1I TTAA 2 cut(s) 47, 321
Tru9I TTAA 2 cut(s) 47, 321
TscAI CASTG 3 cut(s) 29, 192, 211
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 4 cut(s) 268, 539, 542, 545
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 32, 95
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 29, 192, 211
XagI CCTNNNNNAGG 1 cut(s) 334
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.