Prupe.5G139500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015895
Physical Location & Seq
Reverse (-)
13070125 .. 13070598
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G139500.1

Sequence Viewer

Length: 474 bp
ATGGCGAATGGGTTAAGACAATATGCAACCTCAACCTCACCCAAGACGAAAGCCTACACCCCAAGTGCTGGTGTCACTGCACAAAACCAGCAGAGCTACAAAAGGTTCTTAAGGGGAGACTTCGTGCCTGTCTATGTAGTTCTTGGGATGATAACAGTGTCACTGGGGTTGGGGCTCCACACCGCGATGCATCAGCTGAAGCACAACCCCCATGTCTACGTGAAGAAGCAGCGACGCGAGACGCTGCCGGAGGTGGTGGAGCCGGAGCATGTGGCGGAGGAGGCCGAGAAGTTCATGACGAACTCGTTTTTCAGGAAGGTGGCTCATGTTGAGGAGTATGACGGCTACAATCATGCCGTTAAAGATCCTACCCGTAGAGATGCTTTTGCTTACAAACCCTCCAACCCGCGAGAGCGTGTCGTGACTCTCAAGGACGTTGGAGCAGAGCCTGTCCAACCCAAGGCTTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

9.49

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AccI GTMKAC 1 cut(s) 216
AccII CGCG 3 cut(s) 185, 237, 409
AciI CCGC 3 cut(s) 183, 275, 407
AclWI GGATC 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 68, 460
AflII CTTAAG 1 cut(s) 109
AluBI AGCT 2 cut(s) 96, 196
AluI AGCT 2 cut(s) 96, 196
Alw26I GTCTC 2 cut(s) 111, 233
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 229, 244
AsuHPI GGTGA 1 cut(s) 30
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 231, 241
BceAI ACGGC 2 cut(s) 341, 358
BcoDI GTCTC 2 cut(s) 111, 233
BfaI CTAG 1 cut(s) 472
BfrI CTTAAG 1 cut(s) 109
BisI GCNGC 2 cut(s) 230, 245
BlsI GCNGC 2 cut(s) 231, 246
BmiI GGNNCC 2 cut(s) 176, 261
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 3 cut(s) 177, 199, 370
BmuI ACTGGG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 459
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 460
Bse1I ACTGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 68, 460
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 293, 347
BseXI GCAGC 2 cut(s) 231, 241
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 3 cut(s) 185, 237, 409
BshFI GGCC 1 cut(s) 284
BsiSI CCGG 2 cut(s) 248, 263
BslI CCNNNNNNNGG 2 cut(s) 68, 460
BsmAI GTCTC 2 cut(s) 111, 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 3 cut(s) 183, 275, 407
BspANI GGCC 1 cut(s) 284
BspFNI CGCG 3 cut(s) 185, 237, 409
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 176, 261
BspPI GGATC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 157
BstAFI CTTAAG 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 220
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 3 cut(s) 185, 237, 409
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 2 cut(s) 111, 233
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 272
BstUI CGCG 3 cut(s) 185, 237, 409
BstV1I GCAGC 2 cut(s) 231, 241
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 1 cut(s) 284
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 75, 161, 162
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 294
CseI GACGC 2 cut(s) 243, 250
CviAII CATG 5 cut(s) 212, 269, 295, 326, 353
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 5 cut(s) 215, 272, 298, 329, 356
FaiI YATR 9 cut(s) 24, 135, 213, 270, 296, 327, 339, 354, 469
FatI CATG 5 cut(s) 211, 268, 294, 325, 352
FauI CCCGC 1 cut(s) 414
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 230, 245
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 230, 245
FspBI CTAG 1 cut(s) 472
GluI GCNGC 2 cut(s) 230, 245
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 248, 263
HgaI GACGC 2 cut(s) 243, 250
Hin1II CATG 5 cut(s) 215, 272, 298, 329, 356
HinfI GANTC 1 cut(s) 424
HpaII CCGG 2 cut(s) 248, 263
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 295, 313, 421
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 219, 435
HpyCH4V TGCA 3 cut(s) 26, 80, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 219, 435
Hsp92II CATG 5 cut(s) 215, 272, 298, 329, 356
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 4 cut(s) 180, 259, 265, 440
LpnPI CCDG 8 cut(s) 54, 101, 141, 149, 261, 276, 298, 462
Lsp1109I GCAGC 2 cut(s) 231, 241
LweI GCATC 3 cut(s) 177, 199, 370
MaeI CTAG 1 cut(s) 472
MaeII ACGT 2 cut(s) 219, 435
MaeIII GTNAC 3 cut(s) 73, 159, 421
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 2 cut(s) 418, 426
MnlI CCTC 7 cut(s) 40, 46, 244, 271, 274, 325, 409
Mph1103I ATGCAT 1 cut(s) 192
MseI TTAA 3 cut(s) 14, 110, 360
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 2 cut(s) 248, 263
MvnI CGCG 3 cut(s) 185, 237, 409
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 364
NlaIII CATG 5 cut(s) 215, 272, 298, 329, 356
NlaIV GGNNCC 2 cut(s) 176, 261
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 3 cut(s) 73, 159, 421
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 1 cut(s) 272
PagI TCATGA 1 cut(s) 294
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 2 cut(s) 231, 246
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 176, 261
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 3 cut(s) 14, 110, 360
SatI GCNGC 2 cut(s) 230, 245
Sau3AI GATC 1 cut(s) 364
SchI GAGTC 1 cut(s) 418
SduI GDGCHC 1 cut(s) 177
SetI ASST 9 cut(s) 32, 38, 98, 107, 198, 222, 255, 321, 438
SfaNI GCATC 3 cut(s) 177, 199, 370
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 109, 428
SmoI CTYRAG 2 cut(s) 109, 428
SsiI CCGC 3 cut(s) 183, 275, 407
SspMI CTAG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 222, 438
Tru1I TTAA 3 cut(s) 14, 110, 360
Tru9I TTAA 3 cut(s) 14, 110, 360
TscAI CASTG 3 cut(s) 82, 162, 168
TseFI GTSAC 3 cut(s) 73, 159, 421
TseI GCWGC 2 cut(s) 229, 244
Tsp45I GTSAC 3 cut(s) 73, 159, 421
TspDTI ATGAA 2 cut(s) 283, 456
TspRI CASTG 3 cut(s) 82, 162, 168
Van91I CCANNNNNTGG 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 109
XceI RCATGY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 472
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.