Rw7G008180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015895
Physical Location & Seq
Reverse (-)
7486265 .. 7486913
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008180.1

Sequence Viewer

Length: 516 bp
ATGGCTTTTAGATCAATGAATCAGTGGCAACGATTGTTTAGTGGGTTAAGAGGGTATGCAACCTCAACCTTACCGAAGATGAAAGCCAGTAAGAAGCCAAGGGGAGATTTCGTGCCCGTGTATGTAGCTGTTGGGATGATAGCACTTTCAGTGGGGCTGGGACTCCACACTGCCAAGCAACAGCTCTTCCACAACCCCCAAGTCTTTGTGAAGAAGGAGCGGCGGGAGATGCTGCCGGAGGTGGTGGAGCCCGACCGTGTGGTGGAGGACGCTGATAAGTTTTTTAACAAATCCTTTTTCAGGAAGGTGGCTCATGTTCAGGAGTTTGACAATCCCATAACATCTGATCCTACTCATGGAGATGTTTATGCTCAGCGGCCACGTGCTGTGACTCTCAAAGAGGCCGGAGTAGATCCTAAAGTGGTCGCCGAGGGACTAGATCCTCGAATCCGTGCGAGACTTGGGGTAGATCCGAAAAAGGTCGTGGAAGAAGATACTAAAGCAGCAGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

9.69

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 3 cut(s) 220, 223, 376
AclWI GGATC 4 cut(s) 341, 407, 434, 464
AcoI YGGCCR 1 cut(s) 377
AcvI CACGTG 1 cut(s) 383
AfiI CCNNNNNNNGG 3 cut(s) 262, 300, 356
AluBI AGCT 3 cut(s) 128, 184, 509
AluI AGCT 3 cut(s) 128, 184, 509
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 4 cut(s) 341, 407, 434, 464
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 2 cut(s) 377, 402
ApeKI GCWGC 4 cut(s) 232, 503, 506, 509
BaeGI GKGCMC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 252
BbrPI CACGTG 1 cut(s) 383
BbvI GCAGC 2 cut(s) 219, 496
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 1 cut(s) 437
BisI GCNGC 6 cut(s) 221, 233, 377, 504, 507, 510
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 6 cut(s) 222, 234, 378, 505, 508, 511
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 98, 429
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 300, 356
Bse1I ACTGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 98, 429
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 262, 300, 356
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 2 cut(s) 219, 496
BseYI CCCAGC 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 379, 404
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 236, 405
BslFI GGGAC 2 cut(s) 174, 447
BslI CCNNNNNNNGG 3 cut(s) 262, 300, 356
BsmAI GTCTC 1 cut(s) 451
BsmFI GGGAC 2 cut(s) 174, 447
BsnI GGCC 2 cut(s) 379, 404
Bsp1286I GDGCHC 2 cut(s) 117, 252
Bsp143I GATC 5 cut(s) 11, 346, 412, 439, 469
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 3 cut(s) 220, 223, 376
BspANI GGCC 2 cut(s) 379, 404
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 4 cut(s) 341, 407, 434, 464
BspQI GCTCTTC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 98, 429
BssMI GATC 5 cut(s) 11, 346, 412, 439, 469
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 5 cut(s) 14, 349, 415, 442, 472
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 5 cut(s) 11, 346, 412, 439, 469
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 229, 509
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 219, 496
BstX2I RGATCY 3 cut(s) 412, 439, 469
BstYI RGATCY 3 cut(s) 412, 439, 469
BsuRI GGCC 2 cut(s) 379, 404
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 29, 156, 168
CaiI CAGNNNCTG 1 cut(s) 509
CseI GACGC 1 cut(s) 278
CviAII CATG 2 cut(s) 314, 356
DdeI CTNAG 1 cut(s) 372
DpnI GATC 5 cut(s) 13, 348, 414, 441, 471
DpnII GATC 5 cut(s) 11, 346, 412, 439, 469
EaeI YGGCCR 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 252
Eco72I CACGTG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 2 cut(s) 317, 359
FaiI YATR 6 cut(s) 57, 123, 315, 338, 357, 369
FaqI GGGAC 2 cut(s) 174, 447
FatI CATG 2 cut(s) 313, 355
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 6 cut(s) 221, 233, 377, 504, 507, 510
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 6 cut(s) 221, 233, 377, 504, 507, 510
FspBI CTAG 1 cut(s) 437
GluI GCNGC 6 cut(s) 221, 233, 377, 504, 507, 510
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 2 cut(s) 379, 404
HapII CCGG 2 cut(s) 236, 405
HgaI GACGC 1 cut(s) 278
Hin1II CATG 2 cut(s) 317, 359
HinfI GANTC 4 cut(s) 19, 162, 391, 447
HpaII CCGG 2 cut(s) 236, 405
Hpy188I TCNGA 2 cut(s) 346, 474
Hpy188III TCNNGA 2 cut(s) 301, 320
HpyAV CCTTC 2 cut(s) 208, 298
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 509
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 2 cut(s) 317, 359
Kzo9I GATC 5 cut(s) 11, 346, 412, 439, 469
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 217, 247
LpnPI CCDG 6 cut(s) 100, 143, 249, 286, 305, 418
Lsp1109I GCAGC 2 cut(s) 219, 496
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 388
MalI GATC 5 cut(s) 13, 348, 414, 441, 471
MbiI CCGCTC 1 cut(s) 220
MboI GATC 5 cut(s) 11, 346, 412, 439, 469
MboII GAAGA 5 cut(s) 88, 178, 223, 500, 503
MflI RGATCY 3 cut(s) 412, 439, 469
MhlI GDGCHC 2 cut(s) 117, 252
MlyI GAGTC 2 cut(s) 156, 385
MnlI CCTC 7 cut(s) 44, 73, 232, 259, 394, 424, 453
MseI TTAA 2 cut(s) 47, 285
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 2 cut(s) 376, 509
MspI CCGG 2 cut(s) 236, 405
MwoI GCNNNNNNNGC 2 cut(s) 229, 509
NdeII GATC 5 cut(s) 11, 346, 412, 439, 469
NlaIII CATG 2 cut(s) 317, 359
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 19, 447
PkrI GCNGC 6 cut(s) 222, 234, 378, 505, 508, 511
PleI GAGTC 2 cut(s) 156, 385
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 2 cut(s) 156, 385
Ppu21I YACGTR 1 cut(s) 383
PspCI CACGTG 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 3 cut(s) 412, 439, 469
PvuII CAGCTG 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 47, 285
SatI GCNGC 6 cut(s) 221, 233, 377, 504, 507, 510
Sau3AI GATC 5 cut(s) 11, 346, 412, 439, 469
SchI GAGTC 2 cut(s) 156, 385
SduI GDGCHC 2 cut(s) 117, 252
SetI ASST 9 cut(s) 65, 71, 130, 186, 243, 309, 385, 483, 511
SfaNI GCATC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 360
SsiI CCGC 3 cut(s) 220, 223, 376
SspMI CTAG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 385
TaqI TCGA 1 cut(s) 445
TauI GCSGC 2 cut(s) 223, 379
TfiI GAWTC 2 cut(s) 19, 447
Tru1I TTAA 2 cut(s) 47, 285
Tru9I TTAA 2 cut(s) 47, 285
TscAI CASTG 3 cut(s) 29, 156, 175
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 4 cut(s) 232, 503, 506, 509
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 32, 95
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 3 cut(s) 29, 156, 175
XagI CCTNNNNNAGG 1 cut(s) 298
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.