RchiOBHm_Chr7g0188371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015895
Physical Location & Seq
Reverse (-)
7933956 .. 7935188
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16822

Sequence Viewer

Length: 726 bp
ATGATGACGTGTTTCTTCCGGAGGGTTCTAGTGACACTCGACACTTCAGTAATACCATCATCCAATAGCAGTTGGAAGCAAGATAAGAATCACTTTGTGCAAGTGTGTGATATACTGATCCAACCTTCACTCTTGAATACTCTGTTTCTAATTTCGATCACTCTGCTGAAGGTCATGGCTTTTAGATCAATGAATCAGTGGCAACGATTGTTGAGTGGGTTAAGAGGGTATGCAACCTCAACCTTACCAAAGATGAAAGCGTATGCCCCAACTGCTAATTTCGCCGAGCAACAGAGCAGTAAGAAGCCAAGGGGAGATTTCGTGCCCGTGTATGTAGCTGTTGGGATGATAGCACTTTCAGTGGGGCTGGGACTCCACACTGCCAAGCAACAGCTCTTCCACAACCCCCAAGTCTTTGTGAAGAAGGAGCGGCGGGAGATGCTGCCGGAGGTGGTGGAGCCCGACCGTGTGGTGGAGGACGCTGATAAGTTTTTTAACAAATCCTTTTTCAGGAAGGTGGCTCATGTTCATGAGTTTGACAATCCCATAACATCTGATCCTACTCATGGAGATGTTTATGCTCAGCGGCCACGTGCTGTGACTCTCAAAGAGGCCGGAGTAGATCCTAAAGTGGTCGCCGAGGGACTAGATCCTCGACTCCGTGCGAGACTTGGGGTAGATCCGAAAAAGGTCGTGGAAGAAGATACTAAAGCAGCAGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.08

Weight (kDa)

9.51

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07330
fragaria_vesca FvH4_5g09901
malus_domestica MD00G1076100.v1.1 MD14G1144900.v1.1
prunus_persica Prupe.5G139500_v2.0.a1
pyrus_communis pycom06g11960 pycom14g12040
rosa_chinensis RchiOBHm_Chr7g0188371
rosa_laevigata RLG00000004698
rosa_multiflora Rmu_co8426879.1_g000001
rosa_rugosa Rorug06G0490200
rosa_samantha Rh7AG094900 Rh7BG096400 Rh7DG096700
rosa_wichuraiana Rw7G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 430
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 3 cut(s) 430, 433, 586
AclWI GGATC 5 cut(s) 112, 551, 617, 644, 674
AcoI YGGCCR 1 cut(s) 587
AcuI CTGAAG 2 cut(s) 30, 188
AcvI CACGTG 1 cut(s) 593
AdeI CACNNNGTG 1 cut(s) 97
AfiI CCNNNNNNNGG 3 cut(s) 472, 510, 566
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 9
AluBI AGCT 3 cut(s) 338, 394, 719
AluI AGCT 3 cut(s) 338, 394, 719
Alw26I GTCTC 1 cut(s) 661
AlwI GGATC 5 cut(s) 112, 551, 617, 644, 674
AlwNI CAGNNNCTG 1 cut(s) 719
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 2 cut(s) 587, 612
ApeKI GCWGC 4 cut(s) 442, 713, 716, 719
BaeGI GKGCMC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 462
BbrPI CACGTG 1 cut(s) 593
BbvI GCAGC 2 cut(s) 429, 706
BccI CCATC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcoDI GTCTC 1 cut(s) 661
BfaI CTAG 2 cut(s) 29, 647
BisI GCNGC 6 cut(s) 431, 443, 587, 714, 717, 720
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 6 cut(s) 432, 444, 588, 715, 718, 721
BmgBI CACGTC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 459
BmsI GCATC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 308, 639
BsaWI WCCGGW 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 510, 566
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 308, 639
BseGI GGATG 2 cut(s) 59, 351
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 472, 510, 566
BseMII CTCAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 2 cut(s) 429, 706
BseYI CCCAGC 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 2 cut(s) 589, 614
BsiEI CGRYCG 1 cut(s) 466
BsiSI CCGG 3 cut(s) 19, 446, 615
BslFI GGGAC 2 cut(s) 384, 657
BslI CCNNNNNNNGG 3 cut(s) 472, 510, 566
BsmAI GTCTC 1 cut(s) 661
BsmFI GGGAC 2 cut(s) 384, 657
BsnI GGCC 2 cut(s) 589, 614
Bsp1286I GDGCHC 2 cut(s) 327, 462
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 3 cut(s) 430, 433, 586
BspANI GGCC 2 cut(s) 589, 614
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 18
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 459
BspPI GGATC 5 cut(s) 112, 551, 617, 644, 674
BspQI GCTCTTC 1 cut(s) 401
BsrBI CCGCTC 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 308, 639
BssMI GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 593
BstDEI CTNAG 1 cut(s) 582
BstENI CCTNNNNNAGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 59, 351
BstKTI GATC 7 cut(s) 120, 159, 188, 559, 625, 652, 682
BstMAI GTCTC 1 cut(s) 661
BstMBI GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 439, 719
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 429, 706
BstX2I RGATCY 3 cut(s) 622, 649, 679
BstYI RGATCY 3 cut(s) 622, 649, 679
BsuRI GGCC 2 cut(s) 589, 614
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 59, 351
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 203, 366, 378
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 1 cut(s) 529
CseI GACGC 1 cut(s) 488
CviAII CATG 4 cut(s) 175, 524, 530, 566
DdeI CTNAG 1 cut(s) 582
DpnI GATC 7 cut(s) 119, 158, 187, 558, 624, 651, 681
DpnII GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 462
Eco57I CTGAAG 2 cut(s) 30, 188
Eco72I CACGTG 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 178, 527, 533, 569
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 2 cut(s) 384, 657
FatI CATG 4 cut(s) 174, 523, 529, 565
FauI CCCGC 1 cut(s) 426
Fnu4HI GCNGC 6 cut(s) 431, 443, 587, 714, 717, 720
FokI GGATG 2 cut(s) 46, 358
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 6 cut(s) 431, 443, 587, 714, 717, 720
FspBI CTAG 2 cut(s) 29, 647
GluI GCNGC 6 cut(s) 431, 443, 587, 714, 717, 720
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 589, 614
HapII CCGG 3 cut(s) 19, 446, 615
HgaI GACGC 1 cut(s) 488
Hin1II CATG 4 cut(s) 178, 527, 533, 569
HinfI GANTC 5 cut(s) 88, 193, 372, 601, 657
HpaII CCGG 3 cut(s) 19, 446, 615
Hpy188I TCNGA 2 cut(s) 556, 684
Hpy188III TCNNGA 4 cut(s) 19, 133, 511, 530
HpyAV CCTTC 4 cut(s) 135, 163, 418, 508
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 2 cut(s) 8, 592
HpyCH4V TGCA 2 cut(s) 100, 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 439, 719
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 2 cut(s) 8, 592
Hsp92II CATG 4 cut(s) 178, 527, 533, 569
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 2 cut(s) 427, 457
LpnPI CCDG 5 cut(s) 32, 353, 459, 496, 628
Lsp1109I GCAGC 2 cut(s) 429, 706
LweI GCATC 1 cut(s) 429
MaeI CTAG 2 cut(s) 29, 647
MaeII ACGT 2 cut(s) 8, 592
MaeIII GTNAC 2 cut(s) 31, 598
MalI GATC 7 cut(s) 119, 158, 187, 558, 624, 651, 681
MbiI CCGCTC 1 cut(s) 430
MboI GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
MboII GAAGA 5 cut(s) 7, 388, 433, 710, 713
MflI RGATCY 3 cut(s) 622, 649, 679
MhlI GDGCHC 2 cut(s) 327, 462
MluCI AATT 2 cut(s) 150, 277
MlyI GAGTC 3 cut(s) 366, 595, 651
MmeI TCCRAC 2 cut(s) 53, 145
MnlI CCTC 8 cut(s) 15, 218, 247, 442, 469, 604, 634, 663
MroI TCCGGA 1 cut(s) 18
MseI TTAA 2 cut(s) 221, 495
MslI CAYNNNNRTG 2 cut(s) 528, 570
MspA1I CMGCKG 2 cut(s) 586, 719
MspI CCGG 3 cut(s) 19, 446, 615
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 439, 719
NdeII GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
NlaIII CATG 4 cut(s) 178, 527, 533, 569
NlaIV GGNNCC 1 cut(s) 459
NmeAIII GCCGAG 2 cut(s) 310, 664
NmuCI GTSAC 2 cut(s) 31, 598
PagI TCATGA 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 88, 193
PkrI GCNGC 6 cut(s) 432, 444, 588, 715, 718, 721
PleI GAGTC 3 cut(s) 366, 595, 651
PmaCI CACGTG 1 cut(s) 593
PmlI CACGTG 1 cut(s) 593
PpsI GAGTC 3 cut(s) 366, 595, 651
Ppu21I YACGTR 1 cut(s) 593
PspCI CACGTG 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 3 cut(s) 622, 649, 679
PvuII CAGCTG 1 cut(s) 719
RseI CAYNNNNRTG 2 cut(s) 528, 570
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 221, 495
SatI GCNGC 6 cut(s) 431, 443, 587, 714, 717, 720
Sau3AI GATC 7 cut(s) 117, 156, 185, 556, 622, 649, 679
SchI GAGTC 3 cut(s) 366, 595, 651
SduI GDGCHC 2 cut(s) 327, 462
SfaNI GCATC 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 528, 570
Sse9I AATT 2 cut(s) 150, 277
SsiI CCGC 3 cut(s) 430, 433, 586
SspMI CTAG 2 cut(s) 29, 647
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 2 cut(s) 11, 595
TaqI TCGA 3 cut(s) 39, 155, 655
TasI AATT 2 cut(s) 150, 277
TauI GCSGC 2 cut(s) 433, 589
TfiI GAWTC 2 cut(s) 88, 193
Tru1I TTAA 2 cut(s) 221, 495
Tru9I TTAA 2 cut(s) 221, 495
TscAI CASTG 3 cut(s) 203, 366, 385
TseFI GTSAC 2 cut(s) 31, 598
TseI GCWGC 4 cut(s) 442, 713, 716, 719
Tsp45I GTSAC 2 cut(s) 31, 598
TspDTI ATGAA 3 cut(s) 206, 269, 518
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 3 cut(s) 203, 366, 385
XagI CCTNNNNNAGG 1 cut(s) 508
XspI CTAG 2 cut(s) 29, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.