AT5G07500

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016042
Physical Location & Seq
Forward (+)
2372619 .. 2373655
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07500.1

Sequence Viewer

Length: 738 bp
ATGTTGAAAAGTGCAAGTCCAATGGCATTCTACGATATCGGAGAGCAGCAATACTCTACTTTCGGGTACATTTTAAGCAAACCTGGGAACGCAGGAGCTTACGAGATTGACCCTTCGATCCCAAACATCGACGATGCGATCTACGGCTCAGATGAGTTCCGTATGTACGCTTACAAAATCAAACGGTGTCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAGCCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCAGTCGCATGCCCGGCTTTCCGAAATGGCGCATGCCACCGTGGCGACTCATGCGAATTCGCACATGGCGTATTCGAGTACTGGCTCCACCCGGCGCGTTACCGAACACGCGCATGTAACGCCGGGAACTTGTGTCAGAGGAAAGTGTGTTTCTTTGCCCACGCGCCGGAGCAGCTAAGGCAGTCTGAAGGAAAGCACAGGTGCAGGTACGCATATAGGCCGGTGAGGGCTAGAGGTGGTGGAAACGGCGATGGAGTGACGATGAGAATGGACGACGAGGGTTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATTTAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATGATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACACTTTGATTGGATCTCAGAGTTGGTCGATTAA

Protein Analysis

245

Amino Acids

28.18

Weight (kDa)

6.75

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 52 - 85 6.4e-20 AtC3H23-like, CCCH zinc finger
zf-CCCH PF00642 97 - 117 5.9e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07500
fragaria_vesca FvH4_7g26870
malus_domestica MD07G1248000.v1.1
prunus_persica Prupe.2G272000_v2.0.a1
pyrus_communis pycom07g22170
rosa_chinensis RchiOBHm_Chr1g0373551
rosa_laevigata RLG00000026816
rosa_multiflora Rmu_sc0002860.1_g000004
rosa_roxburghii Rroxscaffold_4G00284150
rosa_rugosa Rorug01G0378100
rosa_samantha Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana Rw1G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AccII CGCG 3 cut(s) 379, 393, 446
AciI CCGC 1 cut(s) 594
AclWI GGATC 3 cut(s) 112, 254, 725
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 489
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 5 cut(s) 68, 167, 196, 362, 491
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 2 cut(s) 7, 637
AhdI GACNNNNNGTC 1 cut(s) 219
AjiI CACGTC 1 cut(s) 573
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 98, 457
AluI AGCT 2 cut(s) 98, 457
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 3 cut(s) 112, 254, 725
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 46, 454
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 4 cut(s) 314, 379, 395, 448
AsuC2I CCSGG 3 cut(s) 296, 374, 406
AsuHPI GGTGA 3 cut(s) 224, 517, 598
BbvI GCAGC 2 cut(s) 58, 466
BccI CCATC 1 cut(s) 527
BceAI ACGGC 5 cut(s) 160, 240, 252, 544, 664
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 3 cut(s) 296, 374, 406
BcoDI GTCTC 1 cut(s) 585
BfaI CTAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 2 cut(s) 47, 455
BlsI GCNGC 2 cut(s) 48, 456
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 4 cut(s) 84, 296, 374, 406
BmeRI GACNNNNNGTC 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 573
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 4 cut(s) 84, 296, 374, 406
BmsI GCATC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 458
BpuMI CCSGG 3 cut(s) 296, 374, 406
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 3 cut(s) 83, 235, 322
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 2 cut(s) 215, 368
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 3 cut(s) 83, 235, 322
BseGI GGATG 2 cut(s) 657, 670
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 162, 735
BseNI ACTGG 2 cut(s) 215, 368
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 2 cut(s) 58, 466
BsgI GTGCAG 2 cut(s) 303, 505
Bsh1236I CGCG 3 cut(s) 379, 393, 446
BshFI GGCC 1 cut(s) 502
BsiSI CCGG 6 cut(s) 296, 374, 405, 449, 503, 584
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 1 cut(s) 502
Bso31I GGTCTC 1 cut(s) 585
Bsp143I GATC 5 cut(s) 117, 138, 259, 667, 717
BspACI CCGC 1 cut(s) 594
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 2 cut(s) 161, 734
BspFNI CGCG 3 cut(s) 379, 393, 446
BspLI GGNNCC 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 112, 254, 725
BspTNI GGTCTC 1 cut(s) 585
BsrFI RCCGGY 1 cut(s) 502
BsrI ACTGG 2 cut(s) 215, 368
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 3 cut(s) 83, 235, 322
BssMI GATC 5 cut(s) 117, 138, 259, 667, 717
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 5 cut(s) 186, 236, 281, 323, 579
BstC8I GCNNGC 2 cut(s) 292, 316
BstDEI CTNAG 3 cut(s) 148, 458, 721
BstDSI CCRYGG 2 cut(s) 235, 322
BstF5I GGATG 2 cut(s) 657, 670
BstFNI CGCG 3 cut(s) 379, 393, 446
BstHHI GCGC 4 cut(s) 314, 379, 395, 448
BstKTI GATC 5 cut(s) 120, 141, 262, 670, 720
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 5 cut(s) 117, 138, 259, 667, 717
BstMWI GCNNNNNNNGC 6 cut(s) 296, 324, 333, 401, 454, 460
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 3 cut(s) 294, 318, 399
BstSCI CCNGG 4 cut(s) 82, 294, 372, 404
BstUI CGCG 3 cut(s) 379, 393, 446
BstV1I GCAGC 2 cut(s) 58, 466
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 1 cut(s) 502
BtgI CCRYGG 2 cut(s) 235, 322
BtgZI GCGATG 1 cut(s) 546
BtrI CACGTC 1 cut(s) 573
BtsCI GGATG 2 cut(s) 657, 670
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 292, 316
CfoI GCGC 4 cut(s) 314, 379, 395, 448
Cfr10I RCCGGY 1 cut(s) 502
Csp6I GTAC 5 cut(s) 67, 166, 195, 361, 490
CviAII CATG 5 cut(s) 291, 315, 333, 347, 396
CviQI GTAC 5 cut(s) 67, 166, 195, 361, 490
DdeI CTNAG 3 cut(s) 148, 458, 721
DpnI GATC 5 cut(s) 119, 140, 261, 669, 719
DpnII GATC 5 cut(s) 117, 138, 259, 667, 717
DraIII CACNNNGTG 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 585
Eco32I GATATC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 489
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 37
FaeI CATG 5 cut(s) 294, 318, 336, 350, 399
FaiI YATR 9 cut(s) 164, 292, 316, 334, 348, 397, 496, 498, 675
FaqI GGGAC 1 cut(s) 207
FatI CATG 5 cut(s) 290, 314, 332, 346, 395
FauI CCCGC 1 cut(s) 587
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 47, 455
FokI GGATG 2 cut(s) 664, 677
Fsp4HI GCNGC 2 cut(s) 47, 455
FspBI CTAG 1 cut(s) 513
GlaI GCGC 4 cut(s) 313, 378, 394, 447
GluI GCNGC 2 cut(s) 47, 455
HaeIII GGCC 1 cut(s) 502
HapII CCGG 6 cut(s) 296, 374, 405, 449, 503, 584
HhaI GCGC 4 cut(s) 314, 379, 395, 448
Hin1II CATG 5 cut(s) 294, 318, 336, 350, 399
Hin6I GCGC 4 cut(s) 312, 377, 393, 446
HinP1I GCGC 4 cut(s) 312, 377, 393, 446
HinfI GANTC 2 cut(s) 329, 646
HpaII CCGG 6 cut(s) 296, 374, 405, 449, 503, 584
HphI GGTGA 3 cut(s) 224, 517, 598
Hpy188I TCNGA 8 cut(s) 41, 151, 305, 420, 469, 651, 685, 724
Hpy99I CGWCG 2 cut(s) 134, 560
HpyAV CCTTC 3 cut(s) 123, 464, 619
HpyCH4III ACNGT 5 cut(s) 186, 236, 281, 323, 579
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 3 cut(s) 14, 284, 486
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 324, 333, 401, 454, 460
HpyF3I CTNAG 3 cut(s) 148, 458, 721
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 5 cut(s) 294, 318, 336, 350, 399
HspAI GCGC 4 cut(s) 312, 377, 393, 446
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 5 cut(s) 117, 138, 259, 667, 717
LmnI GCTCC 3 cut(s) 95, 372, 451
Lsp1109I GCAGC 2 cut(s) 58, 466
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 8 cut(s) 269, 380, 398, 538, 563, 573, 614, 702
MalI GATC 5 cut(s) 119, 140, 261, 669, 719
MboI GATC 5 cut(s) 117, 138, 259, 667, 717
MflI RGATCY 1 cut(s) 717
MluCI AATT 1 cut(s) 338
MlyI GAGTC 2 cut(s) 323, 655
MmeI TCCRAC 2 cut(s) 623, 629
MnlI CCTC 7 cut(s) 201, 273, 414, 501, 509, 553, 613
MseI TTAA 2 cut(s) 74, 736
MslI CAYNNNNRTG 1 cut(s) 394
MspI CCGG 6 cut(s) 296, 374, 405, 449, 503, 584
MspR9I CCNGG 4 cut(s) 84, 296, 374, 406
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 3 cut(s) 379, 393, 446
MwoI GCNNNNNNNGC 6 cut(s) 296, 324, 333, 401, 454, 460
NciI CCSGG 3 cut(s) 296, 374, 406
NdeII GATC 5 cut(s) 117, 138, 259, 667, 717
NlaIII CATG 5 cut(s) 294, 318, 336, 350, 399
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 3 cut(s) 538, 573, 702
NspI RCATGY 3 cut(s) 294, 318, 399
PaeI GCATGC 2 cut(s) 294, 318
PcsI WCGNNNNNNNCGW 3 cut(s) 190, 348, 564
PctI GAATGC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 48, 456
PleI GAGTC 2 cut(s) 323, 654
PpsI GAGTC 2 cut(s) 323, 654
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 368
PsuI RGATCY 1 cut(s) 717
RsaI GTAC 5 cut(s) 68, 167, 196, 362, 491
RsaNI GTAC 5 cut(s) 67, 166, 195, 361, 490
RseI CAYNNNNRTG 1 cut(s) 394
SaqAI TTAA 2 cut(s) 74, 736
SatI GCNGC 2 cut(s) 47, 455
Sau3AI GATC 5 cut(s) 117, 138, 259, 667, 717
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 2 cut(s) 323, 655
ScrFI CCNGG 4 cut(s) 84, 296, 374, 406
SetI ASST 8 cut(s) 85, 100, 459, 485, 491, 520, 575, 630
SfaNI GCATC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 394
SphI GCATGC 2 cut(s) 294, 318
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 594
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 4 cut(s) 82, 294, 372, 404
TaaI ACNGT 5 cut(s) 186, 236, 281, 323, 579
TaiI ACGT 1 cut(s) 575
TaqI TCGA 4 cut(s) 116, 129, 357, 732
TasI AATT 1 cut(s) 338
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 2 cut(s) 74, 736
Tru9I TTAA 2 cut(s) 74, 736
TseFI GTSAC 3 cut(s) 538, 573, 702
TseI GCWGC 2 cut(s) 46, 454
Tsp45I GTSAC 3 cut(s) 538, 573, 702
TspGWI ACGGA 2 cut(s) 149, 230
XapI RAATTY 1 cut(s) 338
XceI RCATGY 3 cut(s) 294, 318, 399
XspI CTAG 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.