Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002860.1

Orthogroup ID

OG0016042

Physical Location & Seq

Genomic Coordinates Reverse (-)

16641 .. 17363

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002860.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgttgaacgggtaccaattctacgattacgttcctgttcccgttcccgtcgagcagtacttccaccatggccatgacaccggcttcttcagctccgacgagttccggatgtactcctacaaaatcaagcgctgcccgagaatgcgcagccacgactggaccgactgcccctacgcccatcgcggcgagaaagcacagcgccgcgacccgcgtaggtatccctacgccgccatagtctgcccggccttccgcaacggcgtctgctacaagggcgacgcgtgcgagtacgcgcacggggtgttcgagtactggctccaccctgcgcgttaccgcacgcgcgcctgcaatgcgggcctgttgtgcacccgcaaggtctgcttctttgctcactccccggaccagctgcgggtcccgccacccgagtcgaccaaatcgttcaagtgtcgacagcaccacaacaactttgtctatcgccccgtcggagatcacttgctgatgagcggtgccaatggagccacctcagtgcggtcgccagaacggttggcgacaaataacaatgttattgtcgccgacaggttctctgaatttttgagcagtttgagggcattgaagttaaatgatcaggagggcaatggtggtagtggtgaggtggatatgagggtcgacgagaatgggctgccggaaactttggaggttgattgggtttcggagctgttgcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

240

Amino Acids

27.67

Weight (kDa)

8.06

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07500
fragaria_vesca	FvH4_7g26870
malus_domestica	MD07G1248000.v1.1
prunus_persica	Prupe.2G272000_v2.0.a1
pyrus_communis	pycom07g22170
rosa_chinensis	RchiOBHm_Chr1g0373551
rosa_laevigata	RLG00000026816
rosa_multiflora	Rmu_sc0002860.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284150
rosa_rugosa	Rorug01G0378100
rosa_samantha	Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana	Rw1G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	2 cut(s)	12, 503
AccBSI	CCGCTC	1 cut(s)	501
AccI	GTMKAC	3 cut(s)	425, 445, 663
AccII	CGCG	8 cut(s)	183, 204, 211, 278, 290, 325, 337, 339
AccIII	TCCGGA	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	5 cut(s)	14, 59, 113, 287, 308
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	406, 525
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	7, 439, 610
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	3 cut(s)	93, 403, 712
AluI	AGCT	3 cut(s)	93, 403, 712
Alw21I	GWGCWC	1 cut(s)	365
Alw44I	GTGCAC	1 cut(s)	361
Ama87I	CYCGRG	2 cut(s)	136, 419
Aor13HI	TCCGGA	1 cut(s)	105
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	3 cut(s)	70, 243, 352
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	4 cut(s)	132, 147, 403, 676
ApoI	RAATTY	1 cut(s)	584
Asp718I	GGTACC	1 cut(s)	12
AspLEI	GCGC	7 cut(s)	132, 147, 201, 292, 325, 339, 341
AspS9I	GGNCC	4 cut(s)	159, 352, 397, 409
AsuC2I	CCSGG	2 cut(s)	242, 395
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	2 cut(s)	136, 419
AvaII	GGWCC	3 cut(s)	159, 397, 409
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	12, 503
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	4 cut(s)	119, 159, 390, 663
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	228
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	2 cut(s)	242, 395
BfoI	RGCGCY	2 cut(s)	133, 202
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	7 cut(s)	133, 148, 184, 202, 228, 404, 677
BlsI	GCNGC	7 cut(s)	134, 149, 185, 203, 229, 405, 678
BmcAI	AGTACT	2 cut(s)	59, 308
Bme1390I	CCNGG	2 cut(s)	242, 395
Bme18I	GGWCC	3 cut(s)	159, 397, 409
BmeT110I	CYCGRG	2 cut(s)	136, 419
BmgT120I	GGNCC	4 cut(s)	159, 352, 397, 409
BmiI	GGNNCC	6 cut(s)	14, 314, 410, 411, 505, 514
BmrFI	CCNGG	2 cut(s)	242, 395
BpuMI	CCSGG	2 cut(s)	242, 395
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	67, 393
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 525
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	161, 314
Bse3DI	GCAATG	2 cut(s)	352, 637
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	67, 393
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	406, 525
BseMI	GCAATG	2 cut(s)	352, 637
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	161, 314
BsePI	GCGCGC	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	119, 159, 390, 663
Bsh1236I	CGCG	8 cut(s)	183, 204, 211, 278, 290, 325, 337, 339
Bsh1285I	CGRYCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	72, 245, 354
BshNI	GGYRCC	2 cut(s)	12, 503
BsiEI	CGRYCG	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	2 cut(s)	136, 419
BsiSI	CCGG	5 cut(s)	81, 106, 242, 395, 680
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	406, 525
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	72, 245, 354
BsoBI	CYCGRG	2 cut(s)	136, 419
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	484, 619
Bsp19I	CCATGG	1 cut(s)	67
BspANI	GGCC	3 cut(s)	72, 245, 354
BspCNI	CTCAG	1 cut(s)	533
BspEI	TCCGGA	1 cut(s)	105
BspFNI	CGCG	8 cut(s)	183, 204, 211, 278, 290, 325, 337, 339
BspLI	GGNNCC	6 cut(s)	14, 314, 410, 411, 505, 514
BspT107I	GGYRCC	2 cut(s)	12, 503
BsrBI	CCGCTC	1 cut(s)	501
BsrDI	GCAATG	2 cut(s)	352, 637
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	161, 314
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	67, 393
BssHII	GCGCGC	1 cut(s)	337
BssMI	GATC	2 cut(s)	484, 619
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstC8I	GCNNGC	5 cut(s)	280, 335, 339, 343, 352
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	8 cut(s)	183, 204, 211, 278, 290, 325, 337, 339
BstH2I	RGCGCY	2 cut(s)	133, 202
BstHHI	GCGC	7 cut(s)	132, 147, 201, 292, 325, 339, 341
BstKTI	GATC	2 cut(s)	487, 622
BstMBI	GATC	2 cut(s)	484, 619
BstMCI	CGRYCG	1 cut(s)	530
BstMWI	GCNNNNNNNGC	9 cut(s)	90, 270, 279, 347, 351, 360, 375, 412, 512
BstSCI	CCNGG	2 cut(s)	240, 393
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	8 cut(s)	183, 204, 211, 278, 290, 325, 337, 339
BstV1I	GCAGC	4 cut(s)	119, 159, 390, 663
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	72, 245, 354
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	5 cut(s)	280, 335, 339, 343, 352
CfoI	GCGC	7 cut(s)	132, 147, 201, 292, 325, 339, 341
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	159, 352, 397, 409
CseI	GACGC	2 cut(s)	247, 284
Csp6I	GTAC	5 cut(s)	13, 58, 112, 286, 307
CviAII	CATG	2 cut(s)	68, 74
CviQI	GTAC	5 cut(s)	13, 58, 112, 286, 307
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	2 cut(s)	486, 621
DpnII	GATC	2 cut(s)	484, 619
DraIII	CACNNNGTG	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	67
Eco47I	GGWCC	3 cut(s)	159, 397, 409
Eco47III	AGCGCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	136, 419
EcoO109I	RGGNCCY	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	71, 77
FaiI	YATR	4 cut(s)	69, 75, 233, 656
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	67, 73
FauI	CCCGC	5 cut(s)	216, 343, 374, 399, 420
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	3 cut(s)	425, 445, 663
Fnu4HI	GCNGC	7 cut(s)	133, 148, 184, 202, 228, 404, 677
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	7 cut(s)	133, 148, 184, 202, 228, 404, 677
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	7 cut(s)	131, 146, 200, 291, 324, 338, 340
GluI	GCNGC	7 cut(s)	133, 148, 184, 202, 228, 404, 677
HaeII	RGCGCY	2 cut(s)	133, 202
HaeIII	GGCC	3 cut(s)	72, 245, 354
HapII	CCGG	5 cut(s)	81, 106, 242, 395, 680
HgaI	GACGC	2 cut(s)	247, 284
HhaI	GCGC	7 cut(s)	132, 147, 201, 292, 325, 339, 341
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	71, 77
Hin6I	GCGC	7 cut(s)	130, 145, 199, 290, 323, 337, 339
HinP1I	GCGC	7 cut(s)	130, 145, 199, 290, 323, 337, 339
HincII	GTYRAC	3 cut(s)	426, 446, 664
HindII	GTYRAC	3 cut(s)	426, 446, 664
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	5 cut(s)	81, 106, 242, 395, 680
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	4 cut(s)	363, 426, 446, 664
Hpy188I	TCNGA	4 cut(s)	97, 482, 583, 709
Hpy188III	TCNNGA	2 cut(s)	106, 623
Hpy8I	GTNNAC	4 cut(s)	363, 426, 446, 664
Hpy99I	CGWCG	5 cut(s)	53, 101, 278, 482, 668
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	345, 363, 718
HpyF10VI	GCNNNNNNNGC	9 cut(s)	90, 270, 279, 347, 351, 360, 375, 412, 512
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	71, 77
HspAI	GCGC	7 cut(s)	130, 145, 199, 290, 323, 337, 339
KflI	GGGWCCC	1 cut(s)	409
Kpn2I	TCCGGA	1 cut(s)	105
KpnI	GGTACC	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	484, 619
LmnI	GCTCC	4 cut(s)	98, 318, 512, 709
Lsp1109I	GCAGC	4 cut(s)	119, 159, 390, 663
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	486, 621
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	2 cut(s)	484, 619
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	2 cut(s)	17, 584
MluI	ACGCGT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	2 cut(s)	120, 460
MnlI	CCTC	6 cut(s)	529, 594, 619, 640, 651, 685
Mox20I	TGGCCA	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	1 cut(s)	614
MslI	CAYNNNNRTG	2 cut(s)	72, 521
Msp20I	TGGCCA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	5 cut(s)	81, 106, 242, 395, 680
MspR9I	CCNGG	2 cut(s)	242, 395
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	8 cut(s)	183, 204, 211, 278, 290, 325, 337, 339
MwoI	GCNNNNNNNGC	9 cut(s)	90, 270, 279, 347, 351, 360, 375, 412, 512
NciI	CCSGG	2 cut(s)	242, 395
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	484, 619
NlaIII	CATG	2 cut(s)	71, 77
NlaIV	GGNNCC	6 cut(s)	14, 314, 410, 411, 505, 514
NsbI	TGCGCA	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	521
PauI	GCGCGC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 300, 431
PctI	GAATGC	1 cut(s)	147
PkrI	GCNGC	7 cut(s)	134, 149, 185, 203, 229, 405, 678
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
PspN4I	GGNNCC	6 cut(s)	14, 314, 410, 411, 505, 514
PspPI	GGNCC	4 cut(s)	159, 352, 397, 409
PspPPI	RGGWCCY	1 cut(s)	409
PteI	GCGCGC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	5 cut(s)	14, 59, 113, 287, 308
RsaNI	GTAC	5 cut(s)	13, 58, 112, 286, 307
RseI	CAYNNNNRTG	2 cut(s)	72, 521
SalI	GTCGAC	3 cut(s)	424, 444, 662
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	7 cut(s)	133, 148, 184, 202, 228, 404, 677
Sau3AI	GATC	2 cut(s)	484, 619
Sau96I	GGNCC	4 cut(s)	159, 352, 397, 409
ScaI	AGTACT	2 cut(s)	59, 308
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	2 cut(s)	242, 395
SduI	GDGCHC	1 cut(s)	365
SinI	GGWCC	3 cut(s)	159, 397, 409
SmiMI	CAYNNNNRTG	2 cut(s)	72, 521
Sse9I	AATT	2 cut(s)	17, 584
StyD4I	CCNGG	2 cut(s)	240, 393
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	540
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	51, 303, 425, 445, 663
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	17, 584
TatI	WGTACW	3 cut(s)	57, 111, 306
TauI	GCSGC	3 cut(s)	186, 204, 230
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	4 cut(s)	132, 147, 403, 676
TspRI	CASTG	1 cut(s)	528
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	3 cut(s)	159, 397, 409
XapI	RAATTY	1 cut(s)	584
XmiI	GTMKAC	3 cut(s)	425, 445, 663
ZrmI	AGTACT	2 cut(s)	59, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.