Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016042

Physical Location & Seq

Genomic Coordinates Reverse (-)

62674706 .. 62675427

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTAACGGGTACCAATTCTACGATTACGTTCCTGTTCCGGTTCCCGTCGAGCAGTACTTCCACCATGGCCATGACACCGGCTTCTTCAGCTCCGACGAGTTCCGGATGTACTCCTACAAAATCAAGCGCTGCCCGAGAATGCGCAGCCACGACTGGACCGACTGCCCCTACGCCCATCGCGGCGAGAAAGCACAGCGCCGAGACCCGCGTAGGTATCCCTACGCCGCCATAGTCTGCCCGGCCTTCCGCAACGGCGTCTGCTACAAGGGCGACGCGTGCGAGTACGCGCACGGGGTCTGCTTCTTTGCTCACTCCCCGGACCAGCTGCGGGTCCCGCCACCCGAGTCGACCAAATCGTTCAAGTGTCGACAGCACCACAACAACTTTGTCTATCGCCCCGTCGGAGATCACTTGCTGATGAGCGGTGCCAATGGAGCCACCTCAGTGCGGTCGCCAGAACGGTTGGCGACAAATAACAATGTTATTGTCGCCGACAGGTTCTCTGAATTTTTGAGCAGTTTGAGGGCATTGAAGTTAAATGATCAGGAGGGCAATGGTGGTAGTGGTGAGGTGGATATGAGGGTCGACGAGAATGGGCTGCCGGAAACTTTGGAGGTTGATTGGGTTTCGGAGCTGTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

215

Amino Acids

24.69

Weight (kDa)

6.54

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_AtC3H23	PF25512	34 - 67	1.9e-19	AtC3H23-like, CCCH zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07500
fragaria_vesca	FvH4_7g26870
malus_domestica	MD07G1248000.v1.1
prunus_persica	Prupe.2G272000_v2.0.a1
pyrus_communis	pycom07g22170
rosa_chinensis	RchiOBHm_Chr1g0373551
rosa_laevigata	RLG00000026816
rosa_multiflora	Rmu_sc0002860.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284150
rosa_rugosa	Rorug01G0378100
rosa_samantha	Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana	Rw1G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	2 cut(s)	12, 428
AccBSI	CCGCTC	1 cut(s)	426
AccI	GTMKAC	3 cut(s)	350, 370, 588
AccII	CGCG	4 cut(s)	183, 211, 278, 290
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	8 cut(s)	183, 209, 228, 250, 331, 338, 426, 451
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	4 cut(s)	14, 59, 113, 287
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	331, 450
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	364, 535
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	3 cut(s)	93, 328, 637
AluI	AGCT	3 cut(s)	93, 328, 637
Alw26I	GTCTC	1 cut(s)	198
Ama87I	CYCGRG	2 cut(s)	136, 344
Aor13HI	TCCGGA	1 cut(s)	105
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	2 cut(s)	70, 243
ApeKI	GCWGC	4 cut(s)	132, 147, 328, 601
ApoI	RAATTY	1 cut(s)	509
Asp718I	GGTACC	1 cut(s)	12
AspLEI	GCGC	4 cut(s)	132, 147, 201, 292
AspS9I	GGNCC	3 cut(s)	159, 322, 334
AsuC2I	CCSGG	2 cut(s)	242, 320
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	2 cut(s)	136, 344
AvaII	GGWCC	3 cut(s)	159, 322, 334
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	12, 428
BbvI	GCAGC	4 cut(s)	119, 159, 315, 588
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	228
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	242, 320
BcoDI	GTCTC	1 cut(s)	198
BfoI	RGCGCY	2 cut(s)	133, 202
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	6 cut(s)	133, 148, 184, 228, 329, 602
BlsI	GCNGC	6 cut(s)	134, 149, 185, 229, 330, 603
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	242, 320
Bme18I	GGWCC	3 cut(s)	159, 322, 334
BmeT110I	CYCGRG	2 cut(s)	136, 344
BmgT120I	GGNCC	3 cut(s)	159, 322, 334
BmiI	GGNNCC	6 cut(s)	14, 45, 335, 336, 430, 439
BmrFI	CCNGG	2 cut(s)	242, 320
BpuMI	CCSGG	2 cut(s)	242, 320
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	67, 318
BsaWI	WCCGGW	2 cut(s)	40, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 450
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	562
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	67, 318
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	331, 450
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	119, 159, 315, 588
Bsh1236I	CGCG	4 cut(s)	183, 211, 278, 290
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	72, 245
BshNI	GGYRCC	2 cut(s)	12, 428
BsiEI	CGRYCG	1 cut(s)	455
BsiHKCI	CYCGRG	2 cut(s)	136, 344
BsiSI	CCGG	6 cut(s)	41, 81, 106, 242, 320, 605
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	331, 450
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	72, 245
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	136, 344
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	409, 544
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	8 cut(s)	183, 209, 228, 250, 331, 338, 426, 451
BspANI	GGCC	2 cut(s)	72, 245
BspCNI	CTCAG	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	105
BspFNI	CGCG	4 cut(s)	183, 211, 278, 290
BspLI	GGNNCC	6 cut(s)	14, 45, 335, 336, 430, 439
BspT107I	GGYRCC	2 cut(s)	12, 428
BspTNI	GGTCTC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	67, 318
BssMI	GATC	2 cut(s)	409, 544
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	445
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	4 cut(s)	183, 211, 278, 290
BstH2I	RGCGCY	2 cut(s)	133, 202
BstHHI	GCGC	4 cut(s)	132, 147, 201, 292
BstKTI	GATC	2 cut(s)	412, 547
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	409, 544
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 270, 279, 337, 437
BstSCI	CCNGG	2 cut(s)	240, 318
BstUI	CGCG	4 cut(s)	183, 211, 278, 290
BstV1I	GCAGC	4 cut(s)	119, 159, 315, 588
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	72, 245
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	4 cut(s)	132, 147, 201, 292
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	159, 322, 334
CseI	GACGC	2 cut(s)	247, 284
Csp6I	GTAC	4 cut(s)	13, 58, 112, 286
CviAII	CATG	2 cut(s)	68, 74
CviJI	RGCY	9 cut(s)	72, 84, 93, 150, 245, 328, 440, 601, 637
CviKI_1	RGCY	9 cut(s)	72, 84, 93, 150, 245, 328, 440, 601, 637
CviQI	GTAC	4 cut(s)	13, 58, 112, 286
DdeI	CTNAG	1 cut(s)	445
DpnI	GATC	2 cut(s)	411, 546
DpnII	GATC	2 cut(s)	409, 544
EaeI	YGGCCR	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	159, 322, 334
Eco47III	AGCGCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	136, 344
EcoO109I	RGGNCCY	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	2 cut(s)	71, 77
FaiI	YATR	4 cut(s)	69, 75, 233, 581
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	67, 73
FauI	CCCGC	3 cut(s)	216, 324, 345
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	3 cut(s)	350, 370, 588
Fnu4HI	GCNGC	6 cut(s)	133, 148, 184, 228, 329, 602
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	6 cut(s)	133, 148, 184, 228, 329, 602
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	4 cut(s)	131, 146, 200, 291
GluI	GCNGC	6 cut(s)	133, 148, 184, 228, 329, 602
HaeII	RGCGCY	2 cut(s)	133, 202
HaeIII	GGCC	2 cut(s)	72, 245
HapII	CCGG	6 cut(s)	41, 81, 106, 242, 320, 605
HgaI	GACGC	2 cut(s)	247, 284
HhaI	GCGC	4 cut(s)	132, 147, 201, 292
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	71, 77
Hin6I	GCGC	4 cut(s)	130, 145, 199, 290
HinP1I	GCGC	4 cut(s)	130, 145, 199, 290
HincII	GTYRAC	3 cut(s)	351, 371, 589
HindII	GTYRAC	3 cut(s)	351, 371, 589
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	6 cut(s)	41, 81, 106, 242, 320, 605
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	3 cut(s)	351, 371, 589
Hpy188I	TCNGA	4 cut(s)	97, 407, 508, 634
Hpy188III	TCNNGA	2 cut(s)	106, 548
Hpy8I	GTNNAC	3 cut(s)	351, 371, 589
Hpy99I	CGWCG	5 cut(s)	53, 101, 278, 407, 593
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 270, 279, 337, 437
HpyF3I	CTNAG	1 cut(s)	445
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	71, 77
HspAI	GCGC	4 cut(s)	130, 145, 199, 290
KflI	GGGWCCC	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	105
KpnI	GGTACC	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	409, 544
LmnI	GCTCC	3 cut(s)	98, 437, 634
Lsp1109I	GCAGC	4 cut(s)	119, 159, 315, 588
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	411, 546
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	2 cut(s)	409, 544
MboII	GAAGA	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	2 cut(s)	17, 509
MluI	ACGCGT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	120, 385
MnlI	CCTC	6 cut(s)	454, 519, 544, 565, 576, 610
Mox20I	TGGCCA	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	6, 539
MslI	CAYNNNNRTG	2 cut(s)	72, 446
Msp20I	TGGCCA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	6 cut(s)	41, 81, 106, 242, 320, 605
MspR9I	CCNGG	2 cut(s)	242, 320
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	4 cut(s)	183, 211, 278, 290
MwoI	GCNNNNNNNGC	5 cut(s)	90, 270, 279, 337, 437
NciI	CCSGG	2 cut(s)	242, 320
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	409, 544
NlaIII	CATG	2 cut(s)	71, 77
NlaIV	GGNNCC	6 cut(s)	14, 45, 335, 336, 430, 439
NmeAIII	GCCGAG	1 cut(s)	227
NsbI	TGCGCA	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 356
PctI	GAATGC	1 cut(s)	147
PkrI	GCNGC	6 cut(s)	134, 149, 185, 229, 330, 603
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
PspN4I	GGNNCC	6 cut(s)	14, 45, 335, 336, 430, 439
PspPI	GGNCC	3 cut(s)	159, 322, 334
PspPPI	RGGWCCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	4 cut(s)	14, 59, 113, 287
RsaNI	GTAC	4 cut(s)	13, 58, 112, 286
RseI	CAYNNNNRTG	2 cut(s)	72, 446
SalI	GTCGAC	3 cut(s)	349, 369, 587
SaqAI	TTAA	2 cut(s)	6, 539
SatI	GCNGC	6 cut(s)	133, 148, 184, 228, 329, 602
Sau3AI	GATC	2 cut(s)	409, 544
Sau96I	GGNCC	3 cut(s)	159, 322, 334
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	242, 320
SetI	ASST	9 cut(s)	33, 95, 218, 330, 446, 503, 576, 621, 639
SinI	GGWCC	3 cut(s)	159, 322, 334
SmiMI	CAYNNNNRTG	2 cut(s)	72, 446
Sse9I	AATT	2 cut(s)	17, 509
SsiI	CCGC	8 cut(s)	183, 209, 228, 250, 331, 338, 426, 451
StyD4I	CCNGG	2 cut(s)	240, 318
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	4 cut(s)	51, 350, 370, 588
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	17, 509
TatI	WGTACW	2 cut(s)	57, 111
TauI	GCSGC	2 cut(s)	186, 230
Tru1I	TTAA	2 cut(s)	6, 539
Tru9I	TTAA	2 cut(s)	6, 539
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	4 cut(s)	132, 147, 328, 601
TspRI	CASTG	1 cut(s)	453
VpaK11BI	GGWCC	3 cut(s)	159, 322, 334
XapI	RAATTY	1 cut(s)	509
XmiI	GTMKAC	3 cut(s)	350, 370, 588
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.