Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016042

Physical Location & Seq

Genomic Coordinates Forward (+)

27545719 .. 27547072

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTACATGTTTCATCACCCTATAAGCCAGGCCCCTTATTACCTACACGTGTGGCTCGCCACGCAAATTACCCCATCGCCGCCGTTAATTCCCCGCCCCGTGCATCAAGGTTACTATGAGCTGCCCAACCCGTACCTGAGCCAGTACCCGTACCAATACCAGTACCAGTATTATCCGGGTCACCTGATGGGTCCGGCCCAGTACAACGACCCGATCATGGACAATGCAATCTACGGGTCGGACGAGTTCCGGATGTACGCCTACAAGGTCAAGCGGTGCCCTCGCATGCGCAGCCACGACTGGACCGAGTGCCCCTACGCCCACCGTGGCGAGAAGGCGCAGAGGCGCGACCCGCGCCAGTACTCGTACGCCGCAATCGCGTGCCCCGCTTACCGGAACGGGAGGTGCCACAAGGGGGACCTCTGCGACCTCTCGCACGGCGTGTTCGAGTACTGGCTCCACCCAGACAGGTACCGCACCCGCGCATGCAATGGGACTCCGCATTGCATGCGTAGGGTGTGTTTCTTCGCGCACACCCCTGACGAGCTCCGCCCCGAGCCCGAATTTTACCCACGCAAGTTCTATGTGCCGCATCCATACGATCAGTACCCGCGCCGCCCGTACCGTCCGCATAACTGTGCGTACCGGGCGGTCCAGGCGGGAAGGGGGATGTACGGTGGTGGACATCGAGGCGGCAGGTCAGCGACCGTGGAGGAGTATGAGATGATACTGAAGAACAAGAAGATTATGGACGATTCTTTTGGAAAGGTGGAGAGTTTCCTGAACAGTCTGAGGTCCTTGACGCTGAGTGATGAGCCTTTCGAATTCGAAGACGAGATTGAGGCGATGGATATTTATGAGATGGTGGAGGCAGCACCATCGGTTTCGGAGCTGCCGGAGTTCGACTGGGTTACAGAGCTGTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

310

Amino Acids

36.6

Weight (kDa)

6.56

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07500
fragaria_vesca	FvH4_7g26870
malus_domestica	MD07G1248000.v1.1
prunus_persica	Prupe.2G272000_v2.0.a1
pyrus_communis	pycom07g22170
rosa_chinensis	RchiOBHm_Chr1g0373551
rosa_laevigata	RLG00000026816
rosa_multiflora	Rmu_sc0002860.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284150
rosa_rugosa	Rorug01G0378100
rosa_samantha	Rh1AG387600 Rh1BG351900 Rh1CG364600 Rh1DG382300
rosa_wichuraiana	Rw1G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	687
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	3 cut(s)	276, 405, 471
AccII	CGCG	6 cut(s)	348, 355, 380, 483, 530, 613
AccIII	TCCGGA	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	563, 824
AcuI	CTGAAG	1 cut(s)	752
AcvI	CACGTG	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	442
AfiI	CCNNNNNNNGG	3 cut(s)	217, 393, 415
AflIII	ACRYGT	3 cut(s)	6, 46, 48
AjnI	CCWGG	2 cut(s)	27, 654
AluBI	AGCT	4 cut(s)	121, 547, 892, 919
AluI	AGCT	4 cut(s)	121, 547, 892, 919
Alw21I	GWGCWC	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	554
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	2 cut(s)	30, 195
ApeKI	GCWGC	4 cut(s)	121, 291, 872, 892
ApoI	RAATTY	2 cut(s)	563, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	7 cut(s)	291, 340, 348, 357, 485, 532, 615
AspS9I	GGNCC	7 cut(s)	31, 191, 196, 303, 418, 652, 795
AsuC2I	CCSGG	2 cut(s)	177, 647
AsuHPI	GGTGA	2 cut(s)	8, 173
AsuII	TTCGAA	2 cut(s)	822, 828
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	5 cut(s)	191, 303, 418, 652, 795
BaeGI	GKGCMC	3 cut(s)	281, 314, 386
BanI	GGYRCC	3 cut(s)	276, 405, 471
BanII	GRGCYC	2 cut(s)	549, 561
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	108, 303, 879, 884
BccI	CCATC	5 cut(s)	82, 181, 841, 856, 886
BceAI	ACGGC	2 cut(s)	67, 454
BcgI	CGANNNNNNTGC	2 cut(s)	861, 895
BciT130I	CCWGG	2 cut(s)	29, 656
BcnI	CCSGG	2 cut(s)	177, 647
BfuAI	ACCTGC	1 cut(s)	687
BisI	GCNGC	9 cut(s)	80, 122, 292, 372, 590, 616, 694, 873, 893
BlsI	GCNGC	9 cut(s)	81, 123, 293, 373, 591, 617, 695, 874, 894
BmcAI	AGTACT	2 cut(s)	362, 452
Bme1390I	CCNGG	4 cut(s)	29, 177, 647, 656
Bme18I	GGWCC	5 cut(s)	191, 303, 418, 652, 795
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	7 cut(s)	31, 191, 196, 303, 418, 652, 795
BmiI	GGNNCC	7 cut(s)	33, 192, 278, 407, 419, 458, 473
BmrFI	CCNGG	4 cut(s)	29, 177, 647, 656
BmrI	ACTGGG	2 cut(s)	193, 916
BmsI	GCATC	2 cut(s)	112, 601
BmuI	ACTGGG	2 cut(s)	193, 916
BpiI	GAAGAC	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	2 cut(s)	822, 828
BpuMI	CCSGG	2 cut(s)	177, 647
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	325, 708
BsaWI	WCCGGW	2 cut(s)	249, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 393, 415
Bse1I	ACTGG	8 cut(s)	142, 160, 166, 199, 305, 358, 458, 911
Bse3DI	GCAATG	2 cut(s)	496, 502
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	29, 656
BseDI	CCNNGG	2 cut(s)	325, 708
BseGI	GGATG	3 cut(s)	258, 592, 675
BseLI	CCNNNNNNNGG	3 cut(s)	217, 393, 415
BseMI	GCAATG	2 cut(s)	496, 502
BseMII	CTCAG	3 cut(s)	128, 782, 797
BseNI	ACTGG	8 cut(s)	142, 160, 166, 199, 305, 358, 458, 911
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	3 cut(s)	281, 314, 386
BseXI	GCAGC	4 cut(s)	108, 303, 879, 884
Bsh1236I	CGCG	6 cut(s)	348, 355, 380, 483, 530, 613
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	32, 197
BshNI	GGYRCC	3 cut(s)	276, 405, 471
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	6 cut(s)	176, 194, 250, 394, 646, 896
BsiWI	CGTACG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	431, 508
BslI	CCNNNNNNNGG	3 cut(s)	217, 393, 415
BsmFI	GGGAC	2 cut(s)	431, 508
BsnI	GGCC	2 cut(s)	32, 197
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	2 cut(s)	822, 828
Bsp1286I	GDGCHC	5 cut(s)	281, 314, 386, 549, 561
Bsp13I	TCCGGA	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	213, 601
BspANI	GGCC	2 cut(s)	32, 197
BspCNI	CTCAG	3 cut(s)	129, 783, 798
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	6 cut(s)	348, 355, 380, 483, 530, 613
BspLI	GGNNCC	7 cut(s)	33, 192, 278, 407, 419, 458, 473
BspMI	ACCTGC	1 cut(s)	687
BspT104I	TTCGAA	2 cut(s)	822, 828
BspT107I	GGYRCC	3 cut(s)	276, 405, 471
BsrDI	GCAATG	2 cut(s)	496, 502
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	8 cut(s)	142, 160, 166, 199, 305, 358, 458, 911
BssECI	CCNNGG	2 cut(s)	325, 708
BssMI	GATC	2 cut(s)	213, 601
Bst2UI	CCWGG	2 cut(s)	29, 656
Bst4CI	ACNGT	6 cut(s)	326, 626, 638, 677, 709, 788
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	49
BstBI	TTCGAA	2 cut(s)	822, 828
BstC8I	GCNNGC	5 cut(s)	57, 287, 382, 487, 509
BstDEI	CTNAG	3 cut(s)	137, 791, 806
BstDSI	CCRYGG	2 cut(s)	325, 708
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	3 cut(s)	258, 592, 675
BstFNI	CGCG	6 cut(s)	348, 355, 380, 483, 530, 613
BstHHI	GCGC	7 cut(s)	291, 340, 348, 357, 485, 532, 615
BstKTI	GATC	2 cut(s)	216, 604
BstMBI	GATC	2 cut(s)	213, 601
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 291, 352, 354, 377, 386, 508, 647, 656
BstNI	CCWGG	2 cut(s)	29, 656
BstNSI	RCATGY	4 cut(s)	10, 289, 489, 511
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	27, 175, 645, 654
BstSLI	GKGCMC	3 cut(s)	281, 314, 386
BstUI	CGCG	6 cut(s)	348, 355, 380, 483, 530, 613
BstV1I	GCAGC	4 cut(s)	108, 303, 879, 884
BstV2I	GAAGAC	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	32, 197
BtgI	CCRYGG	2 cut(s)	325, 708
BtgZI	GCGATG	2 cut(s)	60, 860
BtsCI	GGATG	3 cut(s)	258, 592, 675
BveI	ACCTGC	1 cut(s)	687
Cac8I	GCNNGC	5 cut(s)	57, 287, 382, 487, 509
CfoI	GCGC	7 cut(s)	291, 340, 348, 357, 485, 532, 615
Cfr13I	GGNCC	7 cut(s)	31, 191, 196, 303, 418, 652, 795
CseI	GACGC	1 cut(s)	811
CviAII	CATG	5 cut(s)	7, 217, 286, 486, 508
DdeI	CTNAG	3 cut(s)	137, 791, 806
DpnI	GATC	2 cut(s)	215, 603
DpnII	GATC	2 cut(s)	213, 601
DraIII	CACNNNGTG	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	539
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	549, 561
Eco47I	GGWCC	5 cut(s)	191, 303, 418, 652, 795
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	752
Eco72I	CACGTG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	3 cut(s)	31, 418, 795
EcoO65I	GGTNACC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	2 cut(s)	27, 654
EcoT38I	GRGCYC	2 cut(s)	549, 561
FaeI	CATG	5 cut(s)	10, 220, 289, 489, 511
FaqI	GGGAC	2 cut(s)	431, 508
FatI	CATG	5 cut(s)	6, 216, 285, 485, 507
FauI	CCCGC	6 cut(s)	101, 360, 394, 488, 618, 652
Fnu4HI	GCNGC	9 cut(s)	80, 122, 292, 372, 590, 616, 694, 873, 893
FokI	GGATG	3 cut(s)	265, 579, 682
FriOI	GRGCYC	2 cut(s)	549, 561
Fsp4HI	GCNGC	9 cut(s)	80, 122, 292, 372, 590, 616, 694, 873, 893
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	7 cut(s)	290, 339, 347, 356, 484, 531, 614
GluI	GCNGC	9 cut(s)	80, 122, 292, 372, 590, 616, 694, 873, 893
HaeIII	GGCC	2 cut(s)	32, 197
HapII	CCGG	6 cut(s)	176, 194, 250, 394, 646, 896
HgaI	GACGC	1 cut(s)	811
HhaI	GCGC	7 cut(s)	291, 340, 348, 357, 485, 532, 615
Hin1II	CATG	5 cut(s)	10, 220, 289, 489, 511
Hin6I	GCGC	7 cut(s)	289, 338, 346, 355, 483, 530, 613
HinP1I	GCGC	7 cut(s)	289, 338, 346, 355, 483, 530, 613
HinfI	GANTC	2 cut(s)	496, 755
HpaII	CCGG	6 cut(s)	176, 194, 250, 394, 646, 896
HphI	GGTGA	2 cut(s)	8, 173
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	3 cut(s)	241, 792, 889
Hpy188III	TCNNGA	2 cut(s)	250, 781
Hpy8I	GTNNAC	1 cut(s)	683
HpyAV	CCTTC	2 cut(s)	328, 657
HpyCH4III	ACNGT	6 cut(s)	326, 626, 638, 677, 709, 788
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	103, 227, 489, 507, 925
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 291, 352, 354, 377, 386, 508, 647, 656
HpyF3I	CTNAG	3 cut(s)	137, 791, 806
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	10, 220, 289, 489, 511
HspAI	GCGC	7 cut(s)	289, 338, 346, 355, 483, 530, 613
Kpn2I	TCCGGA	1 cut(s)	249
KpnI	GGTACC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	213, 601
LmnI	GCTCC	3 cut(s)	462, 552, 889
Lsp1109I	GCAGC	4 cut(s)	108, 303, 879, 884
LweI	GCATC	2 cut(s)	112, 601
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	110, 179, 910
MalI	GATC	2 cut(s)	215, 603
MboI	GATC	2 cut(s)	213, 601
MboII	GAAGA	4 cut(s)	517, 745, 754, 842
MhlI	GDGCHC	5 cut(s)	281, 314, 386, 549, 561
MluCI	AATT	4 cut(s)	66, 87, 563, 824
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	219
MroI	TCCGGA	1 cut(s)	249
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	636
MspI	CCGG	6 cut(s)	176, 194, 250, 394, 646, 896
MspR9I	CCNGG	4 cut(s)	29, 177, 647, 656
MvaI	CCWGG	2 cut(s)	29, 656
MvnI	CGCG	6 cut(s)	348, 355, 380, 483, 530, 613
MwoI	GCNNNNNNNGC	9 cut(s)	61, 291, 352, 354, 377, 386, 508, 647, 656
NciI	CCSGG	2 cut(s)	177, 647
NdeII	GATC	2 cut(s)	213, 601
NlaIII	CATG	5 cut(s)	10, 220, 289, 489, 511
NlaIV	GGNNCC	7 cut(s)	33, 192, 278, 407, 419, 458, 473
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	290
NspI	RCATGY	4 cut(s)	10, 289, 489, 511
NspV	TTCGAA	2 cut(s)	822, 828
PaeI	GCATGC	3 cut(s)	289, 489, 511
PciI	ACATGT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	3 cut(s)	240, 303, 444
PfeI	GAWTC	1 cut(s)	755
Pfl23II	CGTACG	1 cut(s)	366
PkrI	GCNGC	9 cut(s)	81, 123, 293, 373, 591, 617, 695, 874, 894
PleI	GAGTC	1 cut(s)	490
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	49
PpuMI	RGGWCCY	2 cut(s)	418, 795
PscI	ACATGT	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	2 cut(s)	418, 795
Psp6I	CCWGG	2 cut(s)	27, 654
PspCI	CACGTG	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	27, 654
PspLI	CGTACG	1 cut(s)	366
PspN4I	GGNNCC	7 cut(s)	33, 192, 278, 407, 419, 458, 473
PspPI	GGNCC	7 cut(s)	31, 191, 196, 303, 418, 652, 795
PspPPI	RGGWCCY	2 cut(s)	418, 795
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	9 cut(s)	80, 122, 292, 372, 590, 616, 694, 873, 893
Sau3AI	GATC	2 cut(s)	213, 601
Sau96I	GGNCC	7 cut(s)	31, 191, 196, 303, 418, 652, 795
ScaI	AGTACT	2 cut(s)	362, 452
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	4 cut(s)	29, 177, 647, 656
SduI	GDGCHC	5 cut(s)	281, 314, 386, 549, 561
SfaNI	GCATC	2 cut(s)	112, 601
SfuI	TTCGAA	2 cut(s)	822, 828
SinI	GGWCC	5 cut(s)	191, 303, 418, 652, 795
SmiMI	CAYNNNNRTG	1 cut(s)	636
SphI	GCATGC	3 cut(s)	289, 489, 511
Sse9I	AATT	4 cut(s)	66, 87, 563, 824
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	4 cut(s)	27, 175, 645, 654
TaaI	ACNGT	6 cut(s)	326, 626, 638, 677, 709, 788
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	5 cut(s)	447, 688, 822, 828, 903
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	4 cut(s)	66, 87, 563, 824
TatI	WGTACW	4 cut(s)	3, 201, 360, 450
TauI	GCSGC	5 cut(s)	82, 374, 592, 618, 696
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	121, 291, 872, 892
Tsp45I	GTSAC	1 cut(s)	179
VpaK11BI	GGWCC	5 cut(s)	191, 303, 418, 652, 795
XapI	RAATTY	2 cut(s)	563, 824
XceI	RCATGY	4 cut(s)	10, 289, 489, 511
ZrmI	AGTACT	2 cut(s)	362, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.